barSeed - Barley Seed Development Database

Probe CUST_10752_PI390587928

Source Contig U35_5660

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10752_PI390587928	Hv_44K_v2	GATGTCCGCCGTTTTCCATTTTCTCCTACTAATAAAAAGTTGCCCAGTACTACTAAAAAA	423	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7010.1	581	9e-22	368 - 422	100	55 / 55	plus	None
MLOC	AK374683	1581	3e-21	1528 - 1581	100	54 / 54	plus	None
JLOC1	JLOC1_4618.1	530	5e-22	364 - 418	100	55 / 55	plus
Harvest21	ABC33835	395	2e-22	331 - 385	100	55 / 55	plus
Harvest35	U35_5660	494	3e-25	424 - 483	100	60 / 60	plus

Contig Sequence (494 bp)

>U35_5660 494 Hv_44K_v2
GGCGGCGAGCTGGGAGCACGAGGGGTACGCGCAGGCGAGGGAGGCGGCGCTGGCGGGCGC
GGGGCTCGCGGAGAGCGGCGTCAAGGGGTGGAGGCGGCCGTTCGTGACGCACTTCACGGG
GTGCCAGCCATGCAGCGGCGACCGGAACCGGGACTACTCCGGGGACAGCTGCGACGACGG
CATCCGGCGCGCGCTCAACTTCGCCGACGACCAGGTGCTCAGGGACTACGGGTTCCGGCA
CGCCGGTCCGCTCAGCGACGACGTGCGGCCGCTGCCGTTCGATTACCCCGCGGCGGCCGG
GAGGCGCTGACAACGGAACCGGCGAGTCATCATCGACCTTTTTTTTCCTTTTTGAGAAGA
GTCATCGTCGACCTGACGGGTGGCGAGTTTTGTCTTCGTGCTGTTGTTGTTCAGTACACA
CTGGATGTCCGCCGTTTTCCATTTTCTCCTACTAATAAAAAGTTGCCCAGTACTACTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_5660 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None