barSeed - Barley Seed Development Database

Probe CUST_10751_PI390587928

Source Contig U35_5661

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10751_PI390587928	Hv_44K_v2	TGATGTCTGAATCACGATGATCGTATTTGTGCAATTTGAACTGCATTTGCTGAGTTCAAA	564	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.325	1.278	1.043	0.919	0.436	0.461
Raw	4160.700	6302.820	4451.190	6257.660	1037.735	1181.625

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_50027.1	945	4e-23	522 - 578	100	57 / 57	plus
Harvest21	ABC12490	633	2e-21	565 - 617	100	53 / 53	plus	ABC12490
Harvest35	U35_5661	638	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_5661 638 Hv_44K_v2
GTCCTCCTCTCTCTCGCCCTCGCCGTCGCCGTCGTCTCCGCCTCCAGCCGGCCGCGCCGC
CAGCCCGTCTCCGCCGATGGCGACTGTGCCAGTTAACCCCAAGCCATTCTTACAAAACTT
AACAGGGAAGATGGTCATCGTCAAGCTGAAATGGGGCATGGAGTACAAAGGTTATCTTGT
TTCAGTGGACTCCTACATGAATCTGCAGCTAAGTGGTACCGAGGAATTCATTGATGGACA
ATGCTCTGGAAATTTGGGAGACATACTGATAAGATGCAACAATGTGATGTACCTCCGAGG
TGTTCCAGAGGTGGACACGGAGATTCCAGATGCGGCCTGAAGAGCACATGAACTGTTCCT
GGTTGATGCTTGCTGTTCAATGCTGAAAAAGAACTTCCTAGTTCGTCTCTATTTGCGCCT
ACTCGACTGTATTACGTACATGCATTGAACTCATGTTGACTCTAGTTCTGCATCCTGAAT
GAACGAATGATTAACTTGCATGTTTGAAACGGCTGATCGCTGATTGCTGATAGGTCCTGA
TCCTGCCGTTGCATATGTATGGTTTGATGTCTGAATCACGATGATCGTATTTGTGCAATT
TGAACTGCATTTGCTGAGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5661 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None