barSeed - Barley Seed Development Database

Probe CUST_10749_PI390587928

Source Contig U35_5663

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10749_PI390587928	Hv_44K_v2	CAAATGCTGGGATTTTAGTTGATGAATTCTTTGTGTACGTTCCTATTCAGTAAACAGACA	1765	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.725	2.028	1.190	0.755	0.329	0.350
Raw	394.719	711.660	375.339	376.461	57.071	66.894

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359455	1906	2e-24	1776 - 1835	100	60 / 60	plus	ABC12345
JLOC1	JLOC1_7367.4	1726	8e-25	1012 - 1071	100	60 / 60	plus
JLOC1	JLOC1_7367.3	1649	8e-25	935 - 994	100	60 / 60	plus
JLOC1	JLOC1_7367.2	1733	8e-25	1019 - 1078	100	60 / 60	plus
JLOC1	JLOC1_7367.1	1733	8e-25	1019 - 1078	100	60 / 60	plus
Harvest21	ABC12345	1828	3e-25	1766 - 1825	100	60 / 60	plus	ABC12345
Harvest35	U35_5663	1828	3e-25	1766 - 1825	100	60 / 60	plus

Contig Sequence (1828 bp)

>U35_5663 1828 Hv_44K_v2
CGCCCCTGAGCTACTACCTTCGCCATGGCCGCCGCTGCCTCCTGCCGCCTTCTCCGGCTG
GCACCACACTGTCTCCGGAGCCCGAGGCATTCCCTCTTTCCTACGCCACTCGCTCTCTCC
TTGGGTTGGCGCCGCTACTGCGCCGCCGCGCCCCCCGTCGCGGCCACGGCGATGCCGACG
GGGGACGCCGTGGGGGAGTTCCGGCGGAGGATCAGGGTGGCTGAAGTGAAGGGAGGGGAG
GACCAAGGCACTTCCTGGGTCGGGAAGGAGCTTACCGTGCGCGGGTGGGTGCGCACCTGC
CGTGCCCAGAGGACCGTCACATTCGTGGAGGTTAATGATGGATCTTGCTTGTCCAATATG
CAATGTGTGTTAACTCCTGAAACAGAAGGCTATGACCAGATAGACTCTATCACTACGGGG
GCCTCAGTTTTAGTGGAGGGAGTTGTAGCAAGCAGCCAAGGCGGTAAGCAGAAAGTGGAC
CTAAAGGTTTCAAAGATCATTGTGATTGGGGAGAGTGATCCCACATCTTTTCCTATACAG
AAGAAACGAGCATCAAGAGAATTTCTGAGGACTGTGGCACACCTCCGTCCTCGGACAAAC
ACTTTTGGTGCCGTGGCAAGAGTAAGAAATGCTCTGGCATATGCAACTCATAATTTTTTT
CAAGACAATGGATTTATTTGGGTATCAAGCCCTATTATTACTGCCTCAGATTGTGAAGGA
GCGGGGGAGCAGTTCTATGTCACTACTTTGCTTTCAAATAGTGCTGAAGGCGGCTGCCTA
GTCAACAGCATTCCTTCGAAAGATGGAAGGGTCGATTGGTCACAGGATTTCTTCTGCAAA
CCAGCATTTCTGACGGTGTCTGGACAACTGAATGGCGAAACATATGCTTCAGCCCTTTCT
GATATTTACACATTTGGTCCCACATTTAGGGCTGAAAATTCAAACACTTCAAGGCATTTG
GCTGAATTTTGGATGATTGAGCCTGAACTTGCCTTTGCTGATCTAAATGATGACATGGCG
TGTGCAAGTGCATATCTCCAGTATGTAGTAAAGTATATTCTTGAGAACTGCAAAGAAGAT
ATGGATTTTTTTGATACGTGGGTTGAGAAAGGGATCATAGATAGACTAAATAATGTAGCT
GAGAAAAACTTTGTTCAGATGTCATATTCTGATGCTATCAAGCTACTTATTGGCTCCAAC
AAGAAATTTGAGTTCCCGGTGAAGTGGGGGTTGGATTTGCAAAGTGAGCATGAAAGATAT
ATCACAGAAGTCGCATTTGGCGGGCATCCTGTAATAGTTAGAGATTATCCAAAGGAAATT
AAGGCTTTCTATATGCGACAAAACGATGACGGGAAAACGGTTGCTGCAATGGACCTATTG
GTTCCCCGGGTAGGTGAACTTATTGGAGGAAGCCAGAGAGAAGAACGGCTTGATTACCTT
GAAGCTCGGCTGGATGAATCAAATCTTAACAAAGATAGCTACTGGTGGTATTTGGATCTG
CGGCGATATGGATCAGTTCCTCATGCTGGTTTTGGCCTTGGATTTGAACGGCTTGTACAG
TTTGCAACCGGAATAGACAACATCAGAGATGCCATTCCATTCCCCAGGGTTCCTGGTTCT
GCTGAATTTTAGCACTCGAAAAGTGTTCATGTATAATCTTTAGAAGCATTCTTGCCTGGG
ATTTGAAGAAGACCTTACGTTGATTTGTTGTAAAGAGTTTACCTGACTGATTTCACTGCA
TCAGCAAATTCCCCTGCAAATTCGTCAAATGCTGGGATTTTAGTTGATGAATTCTTTGTG
TACGTTCCTATTCAGTAAACAGACAATT

Homology of Contig U35_5663 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g30200.1	556	protein\|tRNA synthetases class II domain containing protein, expressed
Brachypodium v1_2	Bradi1g27450.1	548
Arabidopsis v10	AT4G17300.1	567	\| Symbols: NS1, OVA8, ATNS1 \| Class II aminoacyl-tRNA and biotin synthetases superfamily protein \| chr4:9681558-9684833 FORWARD LENGTH=567