barSeed - Barley Seed Development Database

Probe CUST_10736_PI390587928

Source Contig U35_5677

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10736_PI390587928	Hv_44K_v2	GTTCTGAATTTGAGGAAATGTTTGTTGGTGTTGGTGCTCGGAGAGTGAGATCCCTGTTTC	835	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74755.1	2519	2e-24	1518 - 1577	100	60 / 60	minus	ABC12533
MLOC	MLOC_74755.2	2707	2e-24	1706 - 1765	100	60 / 60	minus	ABC12533
MLOC	AK356297	2981	7e-23	1266 - 1325	98	59 / 60	plus	ABC12533
JLOC1	JLOC1_49841.3	2999	8e-25	977 - 1036	100	60 / 60	plus
JLOC1	JLOC1_49841.2	2769	8e-25	977 - 1036	100	60 / 60	plus
JLOC1	JLOC1_49841.1	2255	8e-25	463 - 522	100	60 / 60	plus
Harvest21	ABC12334	898	3e-25	836 - 895	100	60 / 60	plus
Harvest35	U35_5677	898	3e-25	836 - 895	100	60 / 60	plus

Contig Sequence (898 bp)

>U35_5677 898 Hv_44K_v2
GCGGTAAAGAGGTTTTTCGACTGGGTGGTGTCTGGCGATTGGATGAGCTGGTGGCCGTTC
TGGCGTCCCGACCGCCGCCTGCAGCGCTTGATCGATGACGCCGACGCCGACCCCAAGGAC
CCTGCCAAGCAGAGCGCGCTGCTCCACGAGCTCAACAAGTTTAGCCCAGAGGATGTCATC
AAAAGAATCGAGCAAAGAAGTCATGCGGTAGATAGCAAGGGGGTTGCAGAATACCTACGA
GCTCTTATTCTCACCAACGCTATAGCTGATTACCTACCAGATGAACGGTCTGGGCGTTCA
GCAACCCTACCAGCTCTGTTGCAAGAATTGAAGCAACGTGTATCTGGGGAGGACAAGCCT
TTCTCGAATCCTGGGATATCTGACAAGCAACCATTACATGTAGTAATGGTTGATCCTAAA
GCTACTGGTAGATCAACTCGGTTTGCTCAAGAGATTTTCTCGACTATCTTGTTCACAGTT
GCTGTTGGATTTATGTGGGTAATGGGTGCTGCTGCGCTTCAGAAGTATATTGGTAGCCTA
GGTGGAATAGGCGCATCTGGTGTCGGTTCCAGTTCATCATATTCTGCAAAAGAGTTGAAT
AAGGATGTAACACCCGAGAAGAATGTGAAGACATTTAAGGATGTCAAAGGCTGTGACGAT
GCAAAGAAAGAACTTGAGGAGGTTGTTGAGTATCTAAGGAATCCTACGAAGTTTACTCGC
CTTGGTGGAAAATTACCAAAGGGAATACTTTTAACTGGAGCTCCAGGAACTGGGAAGACG
CTGCTTGCTAAGGCCATTGCTGGGGAAGCTGGTGTGCCGTTCTTTTACCGAGCAGGTTCT
GAATTTGAGGAAATGTTTGTTGGTGTTGGTGCTCGGAGAGTGAGATCCCTGTTTCAAG

Homology of Contig U35_5677 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43150.1	785	5e-171	protein\|OsFtsH9 FtsH protease, homologue of AtFtsH11, expressed
Brachypodium v1_2	Bradi2g43740.3	703	2e-176
Arabidopsis v10	AT5G53170.1	806	3e-136	\| Symbols: FTSH11 \| FTSH protease 11 \| chr5:21563023-21567922 REVERSE LENGTH=806