barSeed - Barley Seed Development Database

Probe CUST_10733_PI390587928

Source Contig U35_5680

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10733_PI390587928	Hv_44K_v2	ATTTGAATCCAACCTCAATAGGTCATTCGTTGGGAATGGATATTCATGACTCCACGAGCC	182	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250022.1	1870	2e-24	1243 - 1302	100	60 / 60	plus	ABC16134
MLOC	MLOC_64635.1	2499	2e-24	561 - 620	100	60 / 60	minus	ABC16134
MLOC	MLOC_64635.2	2591	2e-24	561 - 620	100	60 / 60	minus	ABC16134
JLOC1	JLOC1_42467.2	1947	8e-25	1316 - 1375	100	60 / 60	plus
JLOC1	JLOC1_42467.1	1551	8e-25	920 - 979	100	60 / 60	plus
Harvest21	ABC16134	809	3e-25	568 - 627	100	60 / 60	minus	ABC16134
Harvest35	U35_5680	826	3e-25	183 - 242	100	60 / 60	plus

Contig Sequence (826 bp)

>U35_5680 826 Hv_44K_v2
TAGATTTTCAGCTGCTCAGNAAGAACTGTACAGTTTAATACTGGAGACGAATAAGGAATG
CATAAAGCTTTGTAAACCAGGCACGAGCATTAAAGAGATACACCATCATTCGGTCAAGAT
GTTGATAAGTGGATTCCAAGAACTCGGAATTATAGGAAAGGGCAAATCTATCCAATACAA
TTATTTGAATCCAACCTCAATAGGTCATTCGTTGGGAATGGATATTCATGACTCCACGAG
CCTCAGCAGCGACAAAACCTTGGAGCCAGGCGTTGTAATAACCATTGAACCGGGGATCTA
CATTCCCCCGGTCCCGATACTCAATGAGAAGGCCCCGGACAGGTTCCGTGGCATAGGAAT
AAGGATCGAGGACGAGGTCCTCATCACCGAGTCCGGCCACGAGGTGTTGACGGCGTCTGT
GCCCAAGGAGATCCCCCACCTCACCACCCTGATGAACATGGGCGGCTGTGGCTCCATGGC
GGAAGCCCATGAGGCGAGAGCTGCTTGCAGCTGAGACGATCTTGCAGATAGCGGCGACAT
GATGATCCTTTCTACCGGAGATCATGCAGAATCGACATTACATCCATACATTTTCTTTCC
CCGTTCCTGTCAAAGATGTAGGAATCGGAATCGCCTGAAAACCTAAATGGCAAAACACGC
CTGCTGTTACGGTCTGTAATATGTTCATTAGACAAAGTTTTTGATCTTCATTTTTGTTGT
TGGGGGAATTGTATCTTCATTTGTTGGTGTAATAACTGTAGCTGAAGATGACCGTTCTCC
GACAATCAATGGTGAAAGGGCTTTTCATGGAAAAAAAAAAAAAAAG

Homology of Contig U35_5680 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g37640.4	404	3e-95	protein\|xaa-Pro aminopeptidase, putative, expressed
Brachypodium v1_2	Bradi4g04580.1	501	5e-98
Arabidopsis v10	AT1G09300.1	493	7e-53	Metallopeptidase M24 family protein \| chr1:3003981-3008131 FORWARD LENGTH=493