barSeed - Barley Seed Development Database

Probe CUST_10716_PI390587928

Source Contig U35_32803

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10716_PI390587928	Hv_44K_v2	GGAATGATGTAAAGGATCCTTCAGTATTACGTATGAATTTGGTACTCCATAGTTCCTTTG	3	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.067	6.704	1.388	0.544	0.300	0.232
Raw	191.190	271.028	50.598	31.203	5.036	2.857

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_54305.1	681	4e-23	625 - 681	100	57 / 57	plus
Harvest21	ABC18583	1830	4e-24	1756 - 1813	100	58 / 58	plus	ABC18583
Harvest35	U35_32803	713	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_8665	1830	4e-24	1756 - 1813	100	58 / 58	plus

Contig Sequence (713 bp)

>U35_32803 713 Hv_44K_v2
TCCCAAAGGAACTATGGAGTACCAAATTCATACGTAATACTGAAGGATCCTTTACATCAT
TCCAGATTTTCTACAACTTGGTACACGCGGGATGCACCCGAAAGAATTATCATATGAACA
ACAGTGTCCAGGTCAAGGCAGCACCACTCTACCAATCATCAAAACTTGCTCCACCAGGAG
AAATAAAATCTTTTAAATTCAAGCAGCCTAAGAACATCTAATCAAGAGGATGTCGCGGAT
CATACATCCCTGAAGCAAAGACGTATCACGGCTTGAATGGCGCGAATACTACCACGGAAT
TGTGCCCTCCAAATCCGAATGAGTTAGAAATACCAACATTCACTTCATGCTGCTTCTTTT
CGTTAGCTACTGTATCAAAATCAACTTCAGGCTCCGGGTTAAATTGGTTAATGGTAGGAC
GCACCCATCCTGTAGTTATGGACAGCGGCCGCTGCAGCCTGGTTATGCCAACCAGTCGCT
CGCAATGTGAGAAGGATGACGAAGACGCTCGATCTTGCCGTTTGGCCGCTTTGGAGGTGC
CATTTTGCGTTGGTAAATGTTTTAGACGCCTGTAGGTTATGTGACGTTCCTGTAGATAGT
AATGGTTCTGTCACGCGATTTGCGCCTTGTGTACATATGTTTTGAGCCTAGTTGCCGCGT
TTACTGGCTGTGTTGCAGCGCCCGTGCTGTCAACTATTTTCAGCGTGTTTTAC

Homology of Contig U35_32803 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None