barSeed - Barley Seed Development Database

Probe CUST_10713_PI390587928

Source Contig U35_18511

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10713_PI390587928	Hv_44K_v2	CGAGGAATATGATTATCTGAATTACTCTATGGCTAATGAAAAGATCAATCGATCGCTTCG	1226	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357041	3286	2e-24	3219 - 3278	100	60 / 60	plus	ABC10831
MLOC	MLOC_11949.1	4197	2e-24	2774 - 2833	100	60 / 60	plus	ABC10831 ABC16125
MLOC	MLOC_11949.2	4073	2e-24	2774 - 2833	100	60 / 60	plus	ABC10831 ABC16125
MLOC	MLOC_11949.3	3611	2e-24	2005 - 2064	100	60 / 60	plus	ABC10831 ABC16125
JLOC1	JLOC1_7974.2	1429	2e-21	1376 - 1429	100	54 / 54	plus
JLOC1	JLOC1_7974.1	1450	2e-21	1397 - 1450	100	54 / 54	plus
Harvest21	ABC10831	1282	5e-23	1227 - 1282	100	56 / 56	plus	ABC10831
Harvest35	U35_18511	1309	3e-25	1227 - 1286	100	60 / 60	plus

Contig Sequence (1309 bp)

>U35_18511 1309 Hv_44K_v2
TCGAGTTCAAGATACTACAGAGGAGGTTATAATAGTGACAAGGGTGACAATAGTGATAAA
GAAGGAAGTTGGGCAAACTCAAGACAACGAAATACAGGCCGCAACTATGGACGTAGCCAA
TCAGAGAGGTATGGCATGAGGTCTGATAGGCAGACAACAGATGAAGGTCAGTTTGACAGG
CAGCGGAGATCCTATAGAAATGACTCACACAGGCATGAGGCAGGTGCTCAATACCTTGGA
CAGGGTCAATCTCATGGATCCACAAACTCTACTCGCAGACCAGGGAATATGGCACATGGG
GTTTACTCATCACCATATGCAGTGCCAAATGGCGTTGGTGCTTCAGATTCACCGTATCTT
ATGGTTTACCCATACGAACCAGCTGCAAATCATGGTTCTTCCTCTGAACCGCTTGAATTT
GGTTCACTGGGGCCAATCTCTATGGCAGATGATGGTGATCTACCACAGCCCACTCGCCAA
GTAATGGCCAATGGCTTTTATGGGCAAAGACATACTGCATTTAGGGTTAATTCCTCTCAT
TCATCTCCTGATCAACCATCCTCACCTCAACCTCGCAGGTAGCTGGAAGGATACGATAGC
TTGGCTCTGATACTGAACCGATGCTCACCCTTCAGTTATATTTAGCTCTGGTGCCTGTGA
TTGTGTCGTACGCGACTGCATATTGTTGGACCATCTGGTGTCTGGAGTGCACATGTGCCT
TTAGCTGGTAAGCAGCTGGTGGCCGGATACCTCACCAATATTTAGTTTGTCCAAAGAGAC
ATCAGTCAGCAGCAGGTCATTTTACTGGCAAGCAGCTGATGATACTTTGAGATGCCTCGG
GAATATTTAGTTCCATGGAAAGACGCACCAGTCCTTCCAACATCCTTTACTGGGCTTTTC
TGAGACTAAAGCAGAATCACCTTCTGAATAAACCATGGAACCGGGAGGACGAGAATATAT
CCTCTTGTCGACCCAAAGGATATGATCAAGGAAGGGTTAAGCCAGAATGCCAGCCCTCGT
ATTGTCATCTCGATATCAGAGACAAAAGTGGGGATTATCATCAGATTCTACTAGTACTGC
CTGGGCACCTATCCAGAGCCGAAAGCTAATAGTGAACTCATGTCACTGGGCAGAAGCAAG
ATCATGTAATCATGTTTTCACATATGGAAAACTTTTCACGTTAGATGTATTAGGGTTTAA
GAATCTTGAAGTTGAGTTTCTAGCTTCGAGGAATATGATTATCTGAATTACTCTATGGCT
AATGAAAAGATCAATCGATCGCTTCGTTTTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18511 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11240.1	1317	7e-63	protein\|nucleotidyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g70407.2	1308	1e-91
Arabidopsis v10	None