barSeed - Barley Seed Development Database

Probe CUST_10709_PI390587928

Source Contig U35_18513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10709_PI390587928	Hv_44K_v2	ATTAAGTTCAAGGAAATGCTTGAGGCTCAGAAGAAGGCTGCACTGGAGAATGAGATGCCT	751	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.900	1.436	2.378	2.107	0.773	0.646
Raw	134.353	342.671	482.075	666.556	86.824	79.727

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357695	1749	2e-24	1173 - 1232	100	60 / 60	plus	ABC11299
MLOC	MLOC_57531.3	1906	2e-24	1073 - 1132	100	60 / 60	minus	ABC11299
MLOC	MLOC_57531.2	1530	2e-24	698 - 757	100	60 / 60	minus	ABC11299
MLOC	MLOC_57531.1	1657	2e-24	824 - 883	100	60 / 60	minus	ABC11299
JLOC1	JLOC1_37303.1	1479	8e-25	646 - 705	100	60 / 60	minus
JLOC1	JLOC1_37302.1	1653	8e-25	775 - 834	100	60 / 60	plus
Harvest21	ABC11299	1502	3e-25	752 - 811	100	60 / 60	plus	ABC11299
Harvest35	U35_18513	1375	3e-25	752 - 811	100	60 / 60	plus

Contig Sequence (1375 bp)

>U35_18513 1375 Hv_44K_v2
GGGAGGCGAATGGTCCGCCTCCGACGACGACGACGAGGATCTCAAGGGCCTCACCTACTT
CGAGTACCGCCGCGTCAAGCGCCAGAAGCTCCGCAAAAGCCTGAAGAAGTGCATCTGGAA
AGTCACTCCCAGCCCTCCTCGCCGTGACGACGAGGCCGACGAGTACCAGTACAGCGAGGA
GGAGGAGGAGAAGAAGGAATCGCCCAAGAAGGACTCGTCTGACAAGAGCGATGAGGAGAA
GAATAAGGATTCGTCGGAATCTGAGTCCGATGCGTCTGGTAGCTTATCTGATTCCAGTGA
ATCAGATTATTCTAGGAAGAAAAAGAAAGGGCGTAAGGGCAGACGTTCTAGCAGCAAGCG
TAGCCGGCGTGCCCATCGTCGCCACAGGAAGTCTGATATGGAGAGTGAGAGTGACAGCAA
GGATGAGGATTCAGAGGGTTCCTATGACTCTGAAGATTCTAGGGATAAGAAGAGGAGTAA
GAGATCTTGGAGGCACAAGAAGTCTAAGAGGAGGGGACGGAGCTCTAAGAGGAAGAAGAG
TAAGAGTTTGGATGTTCCATCTGATGCTAGCTCTGAGGAGGTGGAGGTTGTAGGCTCTAG
CCCTATCTCAACGGACAGCAAGAAAACGGGCAAGAGCTCAAGGAAGAAGAGTAGCAGTCA
GTCTGATTCTGAAGATTCGATCCCTTCTGATGCCATCATTGATGAAAAGGAAATTGAAGA
GACAGATGAGCCAGAGATTGACCCAGAGGCAATTAAGTTCAAGGAAATGCTTGAGGCTCA
GAAGAAGGCTGCACTGGAGAATGAGATGCCTGTTGGACCGATGCCACTCCCGCGTGCAGA
TGGTCATATTAGCTATGGTGGTGCACTGAGGCCCGGTGAAGGTGATGCCATTGCACAATA
TGTACAGCAGGGGAAGCGTATCCCACGGCGTGGTGAGGTTGGTCTTTCTGCGGATGAGAT
TCAGAAGTTTGAAGATTTGGGGTATGTGATGAGTGGAAGTAGGCACCAGAGGATGAATGC
TATCCGTATAAGGAAGGAAAACCAAGTTTATAGTGCAGAGGATAAGAGAGCACTGGCCAT
GTTTAACTACGAGGAGAAGTCAAAGAGAGAGCACAAGGTTATGGCTGATTTGCAGCGCTT
GGTTTCAAGAACCATTGGCCAAGAGACAGGACCTTCGCATGATCCATTTGCTACTACAGA
TGACTGAGTAATTATTTCTAGCTATTTTACAAGAAATGGTTGCCACTATTAGTTATGCAT
GTTTTTCCCGTTGTTCATGTAGTACTAGTGATGTCGGCTTTGCATTTTTGTAACTTCTGT
TTTGTGTCGACTGTACTTACCTTATGCTTATCAGTTATTACTCTTTATTCTATAT

Homology of Contig U35_18513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g28220.1	512	2e-90	protein\|NFKB, putative, expressed
Brachypodium v1_2	Bradi4g32070.1	521	2e-93
Arabidopsis v10	AT4G02720.1	422	2e-76	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:1204545-1205813 REVERSE LENGTH=422