barSeed - Barley Seed Development Database

Probe CUST_10696_PI390587928

Source Contig U35_20836

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10696_PI390587928	Hv_44K_v2	GGTGATTGGATTCTTTCCCGCTGGTTTGTGTGCAGTTTTAATGATGGGAGTATTACGAAA	894	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.535	0.493	0.413	1.998	3.546	8.881
Raw	2.713	4.219	4.271	43.570	24.359	69.178

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374064	960	7e-23	903 - 959	100	57 / 57	plus	ABC14528
JLOC1	JLOC1_49969.1	573	4e-23	13 - 69	100	57 / 57	minus
Harvest21	ABC14528	968	3e-25	895 - 954	100	60 / 60	plus	ABC14528
Harvest35	U35_20836	968	3e-25	895 - 954	100	60 / 60	plus

Contig Sequence (968 bp)

>U35_20836 968 Hv_44K_v2
GTGAGCTGAAGCTCGTGCTACTCCAACCTCCAGCCACCGGAGCTCTCCAGCCGCCTGGAT
CTCGTCGTACCTCCGTCCGGCGTCCACCTAGATGAGCTAGCGCGTTCGTGTCCCCTTTCT
CCTCCGGCCGTCCGATCCCATCAAGACCATACCTCATCCCGCCCCGGCTCGGCTGGCCGC
AGCTAGCGTGCGCGTGCGCTTGCCTGAATCGGCCGGACCTGCGTCGCTGCTCAAAGGTGC
GGACCTTGGCGGGCGCTTGCCGGAATCGTCTGGACCTGCATCGTTGCTCAAACGCGCGGA
GCTTGGCGGGCGCTTGCCGGAACCGTCCGGACCCGCTTCGCTGCTCAAAGGCGCGGTGCT
TGGGGCAGCTTGGAGGCGTGCAGACTGACGGGCGCCTGCGGGACGGCAACACAAGAGGGC
GGCACCTCGGTCTTGTGGAGGAGTTTGGAGGAGCAGTCGAGGGAGAAACAAGAAGGACGT
CCACGAGTGCAGAAATTGATACGCCCCTGTAGAGGAAAAAAGGGGGACAGAGATGCTTGG
AGGGGAAGAGGGACTGCAATCTTCAGCATCACGTACAGACACAGCTTGCGGCTTTTGTCG
CTGATTCATCATCAGAACCGAGTGAGATTTCTTACTTTAGGTGCGTGAGATTGTTCATCA
ACGTCCTGGTTCTCTGGAACACTCCTTGGAGAAGCCGTCAGGGATGCAAGACTCGGAGAA
GCCATCAGGGGCGGAGATTCCTTTGCTACTCAATTCAAGAGAAGAATTTCTTGATTCATG
GTTAGGCCGCCATTGATAGTTGTGCGTTTTAAGGCTGTAGGTCACTTCCACCTAATATGA
GAAGTAGATCTTACATGTTGGCGCCCTTTTTTGTATTAGGAGGTTCTTTTCCTGGGTGAT
TGGATTCTTTCCCGCTGGTTTGTGTGCAGTTTTAATGATGGGAGTATTACGAAAAAAAAA
AAAAAAAA

Homology of Contig U35_20836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None