- Probe CUST_10695_PI390587928
- Source Contig U35_20837
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10695_PI390587928 | Hv_44K_v2 | CGGTATCTTTGGTTCTTGACCTCCTGATTTCTGTTTTGATTGATATCAACAATGGTTCTG | 538 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.953 | 1.367 | 1.098 | 0.920 | 0.363 | 0.368 |
| Raw | 1807.113 | 1957.096 | 1425.225 | 1866.213 | 259.846 | 284.510 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK370728 | 1832 | 2e-24 | 1708 - 1767 | 100 | 60 / 60 | plus | ABC17931 ABC26285 ABC26859 |
| MLOC | MLOC_58517.1 | 1336 | 2e-24 | 49 - 108 | 100 | 60 / 60 | minus | ABC17931 ABC26285 ABC26859 |
| MLOC | MLOC_58517.2 | 1678 | 9e-22 | 1 - 55 | 100 | 55 / 55 | minus | ABC17931 ABC26285 ABC26859 |
| JLOC1 | JLOC1_38031.2 | 1372 | 8e-25 | 1240 - 1299 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38031.1 | 1652 | 8e-25 | 1520 - 1579 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26285 | 574 | 3e-25 | 478 - 537 | 100 | 60 / 60 | plus | ABC26285 |
| Harvest35 | U35_20837 | 647 | 3e-25 | 539 - 598 | 100 | 60 / 60 | plus |
Contig Sequence (647 bp)
>U35_20837 647 Hv_44K_v2 GTGATGTTTGCTGCACCTATTCTAGCATTTGTTACTACACACATCTTGTATCTTAACTTC TACGACCTTGACTACGGATGGAATATGAAAGTTTGTGTGGCAATGGGTGTGGTTCATGTT GTCGCATGGTCAATCTGGGCGGCTATGACCCATCATCCGTCACGATTCAAGGTTTGGATC GTCATATTTGGAGGAGCTCTAGCTATGCTTCTTGAAGTGTATGACTTTCCTCCATACAAG GGGTATGCTGATGCACATTCGCTGTGGCACGCGAGCACCATTCCTCTCACCTATCTTTGG TGGACCTTCGTTAGAGATGATGCGGAATTCCGCACCTCCACACTTGTTAAGAAGGCCAAG TAGTAAATTAAGGTCATTATGAATGCTGTTAGCTTCCCCCTTACAAACTTTGATCGATCA GGTAACACGAGCAGAGGACATGCGTGTTGCCATGCCATGCGTCCCAATAGCTCGGTGTTC CCTGGATCGATCAGGACAAATCATTCATCTTTCACCAAGACTCAGCATCTTGTTTACACG GTATCTTTGGTTCTTGACCTCCTGATTTCTGTTTTGATTGATATCAACAATGGTTCTGTA ATAGAAAAAGACATCATCATTTTTCGTGCCAAAAAAAAAAAAAAAAA
Homology of Contig U35_20837 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g13330.1 | 350 | 2e-65 | protein|per1-like family protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g15970.1 | 349 | 5e-63 | |
| Arabidopsis v10 | AT1G16560.1 | 342 | 4e-53 | Per1-like family protein | chr1:5668945-5670343 FORWARD LENGTH=342 |