barSeed - Barley Seed Development Database

Probe CUST_10694_PI390587928

Source Contig U35_20838

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10694_PI390587928	Hv_44K_v2	CAGTATAACCAATCTATGTGCACTGTATTTGCTAGTGTTACAGCTTTATTAATACCAGGA	1016	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.908	1.880	1.167	0.739	0.242	0.309
Raw	475.409	749.484	400.464	404.588	46.084	64.041

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_32544.1	2394	6e-21	2318 - 2376	97	58 / 60	plus
Harvest21	ABC13454	877	3e-25	8 - 67	100	60 / 60	minus	ABC13454
Harvest35	U35_20838	1083	3e-25	1017 - 1076	100	60 / 60	plus

Contig Sequence (1083 bp)

>U35_20838 1083 Hv_44K_v2
GTGGCACTCCTGGCCACCTCTCTTTTGCTTGCCCTAATAAGAAGGTTGAAGTCATATCTA
GTGAAAATAAGGATAATACTGATTCAGCTGAAGCATTGTCCAAGAAGAGGCGCACGTGCT
ATGAATGTGGCGTTCCTGGTCATATATCGTCAGCTTGCCCCAACAAAAAGGCTTCTGAAG
TCATAGCTGATGAAAATAAGGCCAATATTGACTCAGCCACAACGTCGTCGAAGAAGAGAC
GGACATGCTATGAATGTGGCGTTCCTGGTCATCTATCATCTGCTTGCCCAAATAAAAGTG
CTCCTGAAGTCATAGTTGATGAAAATAAGGCCAATACCGAGTCAGCCACAACAGCATCGA
AGAAGAGACGGACATGCTATGAATGTGGCATTCCTGGCCATCTGTCGTCTGCTTGCCCAA
ATAAAAGTGCCCCTGAAGTTGTTTCTAACCACACACAGCCTTTTGATGAACCGAAGTATG
CACCTTACATGGCTTCTGAGCAGAATAAAATAGACGATGGATCAACTTCAGCACCTTCAA
AGCGGAGGAAATGTTATGAATGTGGCATCTCCGGTCATCTCTCATCAGCTTGCCCCAACA
AGAAGGCTACTGTGATTAGTCCTGAGGAAGCTAAACCTGTTGGTGGCTCAAGCATGGAAC
CTTCAGCTGTTTCTGTTGAGAACAAACCTAGTGGCGACACAAGCTCGGCGCCTCCAAAGA
AAAAGAAGAGAAGGACGTGCTATGAATGCGGCATAGCTGGTCATCTCTCCTCAGAATGCC
CCAACATGGCCAAATGATCATGGTGGACCAGTTGCTTTTTGGTAGTTAGTGCCCTTCGTT
CGGGCGCACGAAGAATTTTCTCCTGTGAAGGAGAGGAAATGGTTCCTCACTAGCATGATC
ATGAGACAATTTACTGAGCAATCTTGTATCTTCCATTTACCCTTATCAAATTTTGACTGC
GTCGTATATTCTTTATGGGTGGAAAAGTTTGGCTGCGTGATGAAATTTCCAGACTCCAGT
ATAACCAATCTATGTGCACTGTATTTGCTAGTGTTACAGCTTTATTAATACCAGGAATAA
TTC

Homology of Contig U35_20838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g02400.1	549	3e-81	protein\|RNA recognition motif containing protein, expressed
Brachypodium v1_2	Bradi2g37420.1	621	3e-118
Arabidopsis v10	None