barSeed - Barley Seed Development Database

Probe CUST_10686_PI390587928

Source Contig U35_18524

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10686_PI390587928	Hv_44K_v2	TAAAAATGCTTACACAGCAAAAAGTACATGCGCGATGAGCCCACGAACGCACGATCAAAG	651	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.150	3.211	0.699	1.013	0.930	0.847
Raw	32.498	38.411	6.357	11.614	4.032	3.991

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361437	704	2e-24	620 - 679	100	60 / 60	plus	ABC09699
MLOC	MLOC_39670.1	773	2e-24	524 - 583	100	60 / 60	plus	ABC09699
JLOC1	JLOC1_25880.1	1822	8e-25	1652 - 1711	100	60 / 60	plus
Harvest21	ABC26556	657	3e-25	66 - 125	100	60 / 60	minus
Harvest21	ABC09699	753	3e-25	652 - 711	100	60 / 60	plus	ABC09699
Harvest35	U35_26890	657	3e-25	533 - 592	100	60 / 60	plus
Harvest35	U35_18524	753	3e-25	652 - 711	100	60 / 60	plus

Contig Sequence (753 bp)

>U35_18524 753 Hv_44K_v2
CTTCTTTCCACACCCCGCGGCTGAAGCTGCTGCAGAATCCTCAAACCAATCAACCACCAT
CCATCACCGGAGAGCAGAGCAAGAAAATTCTGTGGACGTTCTGCCCGTCCGCCAAACCCC
TTCCGCGCGCCGCCTCCCTCTCCCGCAACCCTGCGGATCTCTTTCAGCAGCAGCAAGCAG
AGCAGCGAGAGGAGCCCGCCATGGCCATGGTCGCCTCCACCTCCATCGCCTACCACAAGC
CGCGTTTGTCGGTGCTGTGCAGGAAGAAGGACCGGGACAGGGAGCTGGAGCGGGAGAAGG
AGCACAAGCACCCCTTCAAGGTCGTCGAGATCACGCCGCCGCCGCGGTGCCTCGGCGTCC
GCTGCTTTCCCACGAACATCCACTGCGGGGAGAGCGTGACGATCGAAGGGCAGGCGTACA
CGGTGTCGGCGGTGACGCACCGGTACCAGCTGCGCAAGGGGCGGTACGAGCCGAGCGAGA
AGCGCCTCGACGTCCTCTCCACCGGCAGATACATCCTCAACCTCTACCTCGACAGCCTCC
TCGACAAGTCCTAGATAATATACTACCACCACCACCACCACCACCACTACTACTACAGAT
TTATCTATTCCAGCAAATTAGTACTGTACGTACGCTACTTGTGTGATGATATAAAAATGC
TTACACAGCAAAAAGTACATGCGCGATGAGCCCACGAACGCACGATCAAAGCGATCCGAT
ACTTTTGCCCTGGACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18524 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g40670.1	126	8e-55	protein\|expressed protein
Brachypodium v1_2	Bradi5g13710.1	120	2e-60
Arabidopsis v10	None