barSeed - Barley Seed Development Database

Probe CUST_10683_PI390587928

Source Contig U35_18526

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10683_PI390587928	Hv_44K_v2	GGTCCTTGGAATGAAATGTGAATGCAGATGAAACTGTGAGAAAATGTTTTATCGGAAAAA	761	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.012	0.145	0.841	1.672	1.210	1.435
Raw	24.992	651.298	3204.793	9603.863	2535.727	3216.330

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76765.1	3911	7e-23	2073 - 2129	100	57 / 57	minus	ABC09118
JLOC1	JLOC1_51193.1	7162	4e-23	1461 - 1517	100	57 / 57	plus
JLOC1	JLOC1_51194.1	7492	4e-23	5665 - 5721	100	57 / 57	minus
Harvest21	ABC09118	833	3e-25	762 - 821	100	60 / 60	plus	ABC09118
Harvest35	U35_18526	833	3e-25	762 - 821	100	60 / 60	plus

Contig Sequence (833 bp)

>U35_18526 833 Hv_44K_v2
GAGAGAGAGAACCGGAAGGGAGGGACAAAGGTGAGAGAGACCCAAGGATTCGGTGCTTGT
CAGAGGACCATCATCTGCGATCGTACCGCATGGGGATGCACCAGTCGACGACGACCCACG
GCGACGGCCCCAAGAAGGTCCTCCGCCGGCTGCCGCACGTGTACAGCAAGGTGCTCGAGC
TGCCGCTCCCCGCGGACGCCGACGTCAGGGCGTTCGAGGGCACCACTGCGCTCCACTTCT
TCGCGGCCTGCGGCGCCATGGGCGAGGTGAGGGCGCGGCTCGTGAGGATTTACCCCGGGG
TCGTCAAGGTGGTGGTGGTGCACGCTGGGACCGGAGACGGCGGCGAGGACGGCGACGACA
TGGAGCTTGACAGGTGGAGGTACCGGCTGCCTGAAGATTGTTGCCCGGAGCTGGCTATGG
CCGGGTACGTCGACGGGCAGCTTATCGTGACGGTGCCCAAGGGACGCGGCGAAGGCGGCG
ACGGGGCTTGGAGGTGCGGCAATGGAGCAGCGGGGGAGATTGGTGGGAAGCTCGTGGTCG
TGCAATAGAACCGGTGGGGTACTAGTGAGCGAGCGTGAGCTCCATAATTGCTCATCTAGT
CTTGAGTATTCTGGTTACTTCTTGCCATTTGTTTCTTCTTTTTCCATAAAGATGGGCGCT
TTGTGTTCTGCTCCTTCCTGATTTGGGGAAGAGAACTGTTCAATAAGCAACCTTCCTAGC
CTGCTCAAGGACAGTCATTGCAAAGTTTGTACAAACTCTTTGGTCCTTGGAATGAAATGT
GAATGCAGATGAAACTGTGAGAAAATGTTTTATCGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_18526 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None