barSeed - Barley Seed Development Database

Probe CUST_10682_PI390587928

Source Contig U35_18527

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10682_PI390587928	Hv_44K_v2	ACGCAAGTGCTTTCTGAAGTAAACTGAATCCCTTTTGGGGGATTTTATTTTCTCAAAAAA	1861	GeneList: grey60 MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.129	3.551	1.266	0.810	0.297	0.638
Raw	363.194	407.855	128.272	142.006	15.914	39.611

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_7385.1	479	6e-21	119 - 175	98	56 / 57	plus
Harvest35	U35_18527	1931	3e-25	1862 - 1921	100	60 / 60	plus

Contig Sequence (1931 bp)

>U35_18527 1931 Hv_44K_v2
CGACGCCGGCGTGCCCTGGGTCATGTGCAAGCAGGACGACGCCCCCGACCCCGTGATAAA
CACCTGCAATGGCTTCTACTGCGACTACTTCACCCCCAACTCCAACAGCAAGCCCACCAT
GTGGACCGAGGCATGGACTGGATGGTTCACGGCGTTCGGCGGCCCGGTGCCGCACCGGCC
GGTGGAGGACATGGCGTTCGCCGTGGCGAGGTTCATTCAGAAGGGCGGCTCCTTCGTCAA
CTACTACATGTACCATGGAGGCACAAACTTCGACCGGACCGCCGGCGGCCCGTTCATCGC
GACGAGCTACGACTACGACGCCCCGATCGACGAATACGGTCTGATCAGGCAGCCGAAATG
GGGCCACCTGAGGGACCTGCACAAGGCCATCAAGCAGGCCGAGCCGGCGCTCGTCTCCGG
CGACCCGACTATCCAGCGCATCGGCAACTATGAGAAGGCGTACGTGTTCAAGTCGAGCAC
CGGAGCCTGCGCGGCGTTCCTGTCCAACTACCACACCAGCTCTGCCGCGAGGATCGTGTA
CAACGGCCGGCGGTACGACCTCCCGGCCTGGTCCATCAGCATCCTGCCGGACTGCAAGAC
CGCCGTCTTCAACACCGCCACGGTGAAGGAGCCGACGGCGCCGGCGAAGATGAACCCGGC
GGGGGGCTTCGCGTGGCAGTCGTACAGCGAGGACACCAACGCGCTGGACTCGAGCGCCTT
CACCAAGGACGGCCTGGTGGAGCAGCTCAGCATGACCTGGGACAAGTCCGACTACCTGTG
GTACACCACCTACGTCAACATCGACTCGAGCGAGCAGTTCCTCAAGACCGGCCAGTGGCC
GCAGCTCACCATCAACTCCGCCGGCCACTCCGTGCAGGTGTTCGTCAACGGCCAATCCTT
CGGCGTCGCCTATGGCGGCTACAACAGCCCCAAGCTGACGTACAGCAAGCCGGTGAAGAT
GTGGCAGGGCAGCAACAAGATCTCCATCCTCAGCTCCGCAATGGGGCTCCCCAACCAAGG
GACCCATTACGAGGCCTGGAACGTTGGCGTCCTCGGCCCGGTGACGCTGTCCGGGCTCAA
CCAGGGGAAGAGGGACCTCAGCAACCAGAAATGGACGTACCAGATCGGTCTCAAAGGCGA
GTCGCTCGGCGTCAACTCCATCAGCGGGAGCTCCTCCGTCGAGTGGAGCAGCGCCAGCGG
CGCGCAGCCGCTCACATGGCACAAGGCATACTTCGCGGCGCCGGCGGGCAGCGCTCCGGT
GGCGCTGGACATGGGGAGCATGGGGAAGGGCCAGATCTGGGTGAACGGGAACAACGCCGG
TAGGTACTGGTCGTACAGGGCCTCCGGCAGCTGCGGCGGCTGCAGCTACGCCGGCACCTT
CAGCGAGGCCAAGTGCCAGACCAACTGCGGCGACATCTCCCAGCGGTGGTACCACGTGCC
CCGGTCGTGGCTCAAGCCCAGCGGGAACCTGCTCGTCGTGCTCGAGGAGTTCGGCGGCGA
CCTGTCGGGCGTCACGCTCATGACTAGGACGACATAAGGAGCGGGAAGACGGGAGGAAGA
AGAAGGCATGCATGCAGAAACTGTGAATAATCTGAAGAAGAGGGCACGCGAATATACCAG
TACATACGGCCTAGATACGGATACGATTGGTATACGTACAGTCGTACAAAGACTAGTGGG
TGTAGTATTTATTCATGGAGAGCTAAAAAAGGTGTTGGGCGGCGCGGCTGCCGGAACAGT
AGCTGAGGTGCGGCGGCCGGCCGTGCTGCCGCTGCCGGTATAGGATCGTTGATTCGTTGT
GGATCACAGATGTGGAGCCGTTGGTAGGTGGGTGGACCTGCTCTCAGTCTCAGGCCTGCG
CACGCAAGTGCTTTCTGAAGTAAACTGAATCCCTTTTGGGGGATTTTATTTTCTCAAAAA
AAAAAAAAAAG

Homology of Contig U35_18527 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g37560.1	716	protein\|beta-galactosidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g37450.1	720
Arabidopsis v10	AT3G13750.1	847	\| Symbols: BGAL1 \| beta galactosidase 1 \| chr3:4511192-4515756 FORWARD LENGTH=847