barSeed - Barley Seed Development Database

Probe CUST_10680_PI390587928

Source Contig U35_18529

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10680_PI390587928	Hv_44K_v2	TCACGTTTAAGAGCAAATTGTGTTGGACTCCTTGGCTCCTTTTGCTGTCTGGATAAAATG	716	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.119	1.766	1.119	0.903	0.455	0.452
Raw	2036.813	2575.322	1491.513	1858.783	337.219	362.794

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368124	955	7e-23	769 - 825	100	57 / 57	plus	ABC08763 ABC26882
JLOC1	JLOC1_28192.2	905	8e-25	753 - 812	100	60 / 60	plus
Harvest21	ABC08763	776	3e-25	717 - 776	100	60 / 60	plus	ABC08763
Harvest35	U35_18529	776	3e-25	717 - 776	100	60 / 60	plus

Contig Sequence (776 bp)

>U35_18529 776 Hv_44K_v2
CCCAAAACCGTCCTGGTCTCCCCCTCCCCAAGCCAGGCCTAGCTCAGCCACCGGCGGCGG
ACATGGGGACGCGGGAGGTGTACGAGGAGAAGCTCCGCAGCGGCGCCCACCTCCACCGCG
ACCCCACAATCAACCCCGGCCTCGGCTCCGCCCGCTGCCCCCGCTGCCTCTCCCTCCTCA
ACCCCACCACCAACTCCGGACAGGGAGACTGGGCCATCACCTCCGTCCTGCACGACGCCA
CCGCCGTGACTGGTTCCGGCGCCGGCGCGATGCTCAGTGCGGTGCACGGGTTTAATACAG
GGATCCCGTTTGTCCAGAAGCATGTCAAGGGGCCCAAGTGGCTGCACTTACTTGTTGGGG
TTCCTCCTTTGATCTTATTCTCTGGTGCCAGTGCTTTATTTGGGGCATATGCGCTCCCAA
CGTTTGCTCAGCTCACTGTGACATCCTATTATGCTGCATCAAGTGCCTCTCACTATGCAG
TTTCACAGATCACACGCCACATCGAGAAGGCCCATTTATCTGGCGCTGCTGAGGAGAAGT
CTTGATTAGCTGCTAGCAGTGGGTTTGCTGGTGCACATGCCATGTACATGGTATATATAT
GGACTCCCTGCTTCTCCATGTTGCAGCAGTCTTATATTTTTTGCTGAGTTTCAGGCTCGA
ACCTGTTCTACCATAAGTATAATTAATTATTATAGCTTTGCTAATTGCTACCAGTGTCAC
GTTTAAGAGCAAATTGTGTTGGACTCCTTGGCTCCTTTTGCTGTCTGGATAAAATG

Homology of Contig U35_18529 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g10440.1	160	2e-84	protein\|gb protein, putative, expressed
Brachypodium v1_2	Bradi1g46350.1	160	1e-93
Arabidopsis v10	None