barSeed - Barley Seed Development Database

Probe CUST_10679_PI390587928

Source Contig U35_20840

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10679_PI390587928	Hv_44K_v2	TCTGTATACCGGACTTGGACATTTCCAGCAGTGATTCTGTTATATCGTTCTGCCGCAAGA	584	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.856	0.843	2.779	2.690	1.086	0.714
Raw	14.510	21.326	66.150	99.829	14.777	9.750

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55803.1	2113	2e-24	1310 - 1369	100	60 / 60	minus	ABC10685
JLOC1	JLOC1_36034.1	2426	8e-25	724 - 783	100	60 / 60	plus
Harvest21	ABC13440	986	3e-25	659 - 718	100	60 / 60	plus
Harvest21	ABC13439	697	3e-25	624 - 683	100	60 / 60	plus
Harvest35	U35_20841	982	3e-25	655 - 714	100	60 / 60	plus
Harvest35	U35_20840	658	3e-25	585 - 644	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_20840 658 Hv_44K_v2
CGACCACGTCCTCCGCCTCCGGCCATCCTACGCCAGATAATCGACGCCGCCGCCTCCCCC
TTCCATCCCGTATCGCCGCAACCAGCTCGACCTCGCCCCACTGTCTCGCCGCTGCCCAGC
TCGCCGCCGACTAGCTCCCGAAGCTCAAAACGAGGCCTTGGGCAGGCGCCCTTTTCGCTC
TATCCCAGGGCCGGCCCCGATGGCTTGTGCGGCTTACAGCATCAGGGGCCATCTCAAGCT
TGCCACGGGGCACGGCCTGGCCAGTAGTCACCTGTGCGGCGGCCGGAAGCCTTCGCTATC
TTGCCCTGTTTCTCGGGCATGGAGCAGCAATGTCTCCACTGATGCAGCCCAGCGCGTCGA
CCCCCGTTCTCATTTGGCTGTCCGGAGTTCAGAAAGATGGCCCCCAATCCCAAAAGCTTC
GCCGGCGGACGGGGCCGTCGTTGCTGAAGAGAGGATAACTGTACTCGTCATTGGCGGTGG
AGGAAGGGAGCATGCACTCTGTTATGCTTTGACCCGTTCGCCTTCTTGCGAGACAGTTTT
ATGCGCCCCTGGCAATGCTGGTATTGCTCAATCCAGGGATGCGTTCTGTATACCGGACTT
GGACATTTCCAGCAGTGATTCTGTTATATCGTTCTGCCGCAAGAGGGGAGTGGGAATG

Homology of Contig U35_20840 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None