barSeed - Barley Seed Development Database

Probe CUST_10678_PI390587928

Source Contig U35_20841

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10678_PI390587928	Hv_44K_v2	TGCTCAGTATCACACATTCACAGATGCTGCAAAAGCTAAAGAGTACATCAAGGATCAAGG	883	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.921	0.725	1.981	2.225	0.867	0.612
Raw	11.513	13.961	34.577	56.110	7.985	5.805

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55803.1	2113	7e-23	1081 - 1140	98	59 / 60	minus	ABC10685
JLOC1	JLOC1_36034.1	2426	4e-23	953 - 1012	98	59 / 60	plus
Harvest21	ABC13440	986	3e-25	888 - 947	100	60 / 60	plus
Harvest35	U35_20841	982	3e-25	884 - 943	100	60 / 60	plus

Contig Sequence (982 bp)

>U35_20841 982 Hv_44K_v2
GATCTCTCCTGCGCGACGACAACCCTAGCCGCCTCCCTCCTTCCAGCCGCCGTTTCTCCC
CCCGCCCCCGAGACCACGTCCTCCGCCTCCGGCCATCCTACGCCAGATAATCTACGCCGC
CGCCTCCCCCTTCCATCCCGTATCGCCGCAACCAGCTCGACCTCGCCCCACTGTCTCGCC
GCTGCCCAGCTCGCCGCCGACTAGCTCCCGAAGCTCAAAACGAGGCCTTGGGCAGGCGCC
CTTTTCGCTCTACCCCAGGGCCGGCCCCGATGGCTTGTGCGGCTTACAGCATCAGGGGCC
ATCTCAAGCTTGCCACGGGGCACGGCCTGGCCAGTAGTCACCTGTGCGGTGGCCGGAAGC
CTTCGCTATCTTGCCCTGTTTCTCGGGCATGGGGTAGCAATGTCTCCACTGATGCAGCCC
AGCGCGTCGCCTCCCGTTCTCATTTGGCTGTCTGGGATTCAGAAAGATGGCGTTCAATCC
CAAAAGCTTCGCCGGCGGACGGGGCCGTCGTTGCTGAAGAGAGGATAACTGTACTCGTCA
TTGGCGGTGGAGGAAGGGAGCATGCGCTCTGTTATGCTTTGACCCGTTCGCCTTCTTGCG
AGACAGTTTTATGCGCCCCTGGCAATGCTGGTATTGCTCAATCCAGGGATGCGGTCTGTA
TACCGGACTTGGACATTTCCAGCAGTGATTCTGTTATATCGTTCTGCCGCAAGAGGGGAG
TGGGAATGGTGGTAGTGGGTCCTGAAGGCCCTCTCGTTGCGGGCCTTGCGAATGACCTTG
TCAAAGCTGGGATACCGACATTTGGTCCGTCGTCCGAGGCTGCAGCATTAGAAGGATCAA
AGGACTTTATGAAGAGGTTGTGTGATAAGTACAATATCCCCACTGCTCAGTATCACACAT
TCACAGATGCTGCAAAAGCTAAAGAGTACATCAAGGATCAAGGNGCCCCTATTGTTGTTA
AAGCTGATGGATTGGCAGCTGG

Homology of Contig U35_20841 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g09210.2	528	8e-87	protein\|phosphoribosylamine--glycine ligase, putative, expressed
Brachypodium v1_2	Bradi4g21820.1	524	2e-95
Arabidopsis v10	AT1G09830.1	532	3e-60	Glycinamide ribonucleotide (GAR) synthetase \| chr1:3192783-3194936 REVERSE LENGTH=532