barSeed - Barley Seed Development Database

Probe CUST_10677_PI390587928

Source Contig U35_20842

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10677_PI390587928	Hv_44K_v2	GATGCTCCTTATGTATACGAGGATGTAAACCAAGCGATTCAGCATGTCCACAGAAGTGGT	838	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.433	0.546	1.020	1.123	1.058	1.161
Raw	118.637	221.855	380.157	610.352	214.604	257.443

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369445	2096	2e-24	817 - 876	100	60 / 60	plus	ABC49537
MLOC	MLOC_13615.2	1371	2e-24	837 - 896	100	60 / 60	plus	None
MLOC	MLOC_13615.1	1486	2e-24	905 - 964	100	60 / 60	plus	None
JLOC1	JLOC1_9231.1	1604	8e-25	876 - 935	100	60 / 60	plus
Harvest21	ABC13395	843	3e-25	781 - 840	100	60 / 60	plus
Harvest35	U35_20842	901	3e-25	839 - 898	100	60 / 60	plus

Contig Sequence (901 bp)

>U35_20842 901 Hv_44K_v2
TGGGGCNNGGTTCGGGCTTTCGCACAACACCGAGAAAAGCCCCCTTCCCACGTGGCCGAC
ACGAGCCAACTTTCCACCGCCCCTAGTAAAACCAGCCTCCTCCCGCCTTCTCCCCGCTCT
TCTCCCCTCGCCGGCGATCGGTCGGCCGACCGAGATGGCGGCAGCGGCCGCGCGTCTCCG
CCTCCTCGCCTCATGCCTCCTCTTGCCGGCGCCCTCCACGACGGCCCCGCGGCACATGCG
AGGTCTCCGAGGCCTGAGCACGCTCTCCTCGACTCTCGGGTCGGGCGCCGGCGAGGACGA
GATCGAGCGCATCCGCCGCGAGTTCGAGGACGCCAAGCGCAACTACCTCAGCATCCCCGC
CGCCATCAAGGACATGCCCAAGATGAACCCGCAAGGCATCTACGTGAACAAGAACGTCAA
GCTGGACGACCTACAAGTCTATGGGTTCGACTACGATTACACGCTGTCGCACTACTCCGA
CCACCTGCAGTGCTTGATCTATGATCTCGCCAAGAAGCACTTGGTCAATGAGTTGAAGTA
TCCAGAGAGCTGCTTGCAGTACGACTACGACAGTAGCTTTCCTGTCAGGGGCCTTTACTA
TGACAAACTAAAAGGTTGCCTTCTGAAGCTTGATTTCTTCGGTTCTATTGAACCCGATGG
CTGCTTCTTTGGACGACGAAAGCTAAGTTCGACTGAGATAAAAGAACTCTATGGCACAAG
ACATATCGGAAGAGATCAAGCTCGTCAGCTTGTTGGGCTGATGGATGTCTTCTGTTTTAG
TGAGGCATGCCTCATTGCAGATATTGTTCAGCACTTCGTAGATGCCAAGCTGGAGTTTGA
TGCTCCTTATGTATACGAGGATGTAAACCAAGCGATTCAGCATGTCCACAGAAGTGGTTT
A

Homology of Contig U35_20842 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g25640.2	521	2e-124	protein\|5-nucleotidase domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g30660.1	537	2e-130
Arabidopsis v10	AT2G23890.1	553	1e-107	HAD-superfamily hydrolase, subfamily IG, 5-nucleotidase \| chr2:10170680-10173622 FORWARD LENGTH=553