barSeed - Barley Seed Development Database

Probe CUST_10670_PI390587928

Source Contig U35_20849

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10670_PI390587928	Hv_44K_v2	GCATGTACCTGGCGATTAATTAATTATCCCGATTATATGCAATTGATTGTTTCAGCTCAA	704	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.653	3.593	1.304	0.740	0.353	0.409
Raw	161.907	374.548	109.702	103.313	15.894	21.236

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56161.1	831	3e-22	707 - 765	98	58 / 59	plus	ABC13399 ABC17810
JLOC1	JLOC1_36302.1	787	1e-22	707 - 765	98	58 / 59	plus
Harvest21	ABC13399	779	3e-25	705 - 764	100	60 / 60	plus	ABC13399
Harvest35	U35_20849	779	3e-25	705 - 764	100	60 / 60	plus

Contig Sequence (779 bp)

>U35_20849 779 Hv_44K_v2
ACTAGTGGATCCAAAGCGCCACTCCCTCTGCTCCTTCTTGGCTTCTTCTTCCTCCACACG
GCCACACACACGCCACCGCGTCCCCAACTGCCACGCCCACTAGCTCTGCGACCCACGTGC
CGGCCGGGCTTGCTTGCTCCGTTCATCGACCATCGACCATGGAGGGCGAGGCGCCGCAGC
CGCACCAGCTGCTGCTGCACGGCGTCAGCCTCGACCTCCGCCTCGACACGGCCGCGCACC
AGCAGCTGCCCGGGGCCCGGCGCCGGGCGTCCCCTGCCACTCCCGCCGTCGTCGACCACG
CCGGCAAGGAAGGCTTCTCGTGCAACTACTGCCACCGCAAGTTCTTCACCTCGCAGGCGC
TCGGCGGCCACCAGAACGCCCACAAGCTCGAGCGCACCCTCGCCAAGCGCAGCCGCGACG
TCTCAGCCGCCACCGCGACGGCTTCCTCTTCCACGACGACCGTCCGCGGCGGCGGCAGGG
AGCTCTGGGCTGCCCTCGACTCTCCGGCGATGGCGCCCGTGATGGGCATGGGTTGGGCTG
GCAGCACCACAGCGGCCGGTGGGGAGGCAGTGGCGCCGGAGATAGACTTGTCTCTCAAGC
TCTGACGAGCTAATTAAGCCAGCAGTACTACATTCCAGAGGCAACATGTGCATGCATGCG
CGCGCCTAGCTAGCGTGTCAACAAGTAGCGCTTAGCAAATTGTTGCATGTACCTGGCGAT
TAATTAATTATCCCGATTATATGCAATTGATTGTTTCAGCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20849 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None