barSeed - Barley Seed Development Database

Probe CUST_10669_PI390587928

Source Contig U35_32823

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10669_PI390587928	Hv_44K_v2	AGAGATGCTCAAGCTCGTGGCCAAACACCATACCTTGTTCTAAGTGGCAATGCAAAATCA	261	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.009	1.099	1.123	1.002	0.383	0.384
Raw	412.469	710.542	632.281	893.961	120.651	129.041

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376422	1526	2e-24	697 - 756	100	60 / 60	plus	None
MLOC	MLOC_60290.4	2184	2e-24	353 - 412	100	60 / 60	minus	None
MLOC	MLOC_60290.5	2235	2e-24	319 - 378	100	60 / 60	minus	None
MLOC	MLOC_60290.3	2210	2e-24	362 - 421	100	60 / 60	minus	None
MLOC	MLOC_60290.1	2402	2e-24	574 - 633	100	60 / 60	minus	None
MLOC	MLOC_60290.2	2383	2e-24	544 - 603	100	60 / 60	minus	None
JLOC1	JLOC1_39302.3	2498	8e-25	1748 - 1807	100	60 / 60	plus
JLOC1	JLOC1_39302.2	2536	8e-25	1786 - 1845	100	60 / 60	plus
JLOC1	JLOC1_39302.1	2362	8e-25	1694 - 1753	100	60 / 60	plus
Harvest35	U35_32823	386	3e-25	262 - 321	100	60 / 60	plus

Contig Sequence (386 bp)

>U35_32823 386 Hv_44K_v2
TCCACGGTCGAGAAGAAAAGCAAGCTTGTTGGTATTGAGGATGAAGCTTAGGACGGAAAA
AAGGAAATCCGCATAGAAAGAATGGATGAATTCGGTCGAGTGATGACACCTAAGGAGGCA
CTTAGGGATCTTTCGCGCAAATTCCATGGCAAGGGACCAGGTAAAATGAAGCTGGAAAAA
AGGCAGAAGAAGTACCAGGATGATATGAAAGCTAAGCAAATGAAATCTTCTGATACACCT
TTGATGTCCGCGGAAAAGATGAGAGATGCTCAAGCTCGTGGCCAAACACCATACCTTGTT
CTAAGTGGCAATGCAAAATCAGGCCCCACGGGTGATGCCAGTGGCTTTGCCAGCGTGGAG
AAGGCGCATCCGGGTAGTCTGACGCC

Homology of Contig U35_32823 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g30730.2	805	1e-57	protein\|SART-1 family protein, putative, expressed
Brachypodium v1_2	Bradi3g60140.1	821	2e-68
Arabidopsis v10	None