barSeed - Barley Seed Development Database

Probe CUST_10666_PI390587928

Source Contig U35_18532

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10666_PI390587928	Hv_44K_v2	GCTTAATTACACTTACGATTTCCTCGTGGAAACCGATGAATATCAGTTGTAGTCCCCGCC	507	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62713.1	1292	2e-24	551 - 610	100	60 / 60	plus	ABC10134
JLOC1	JLOC1_41061.1	1156	8e-25	440 - 499	100	60 / 60	plus
Harvest21	ABC10134	704	3e-25	433 - 492	100	60 / 60	minus	ABC10134
Harvest21	ABC10133	786	3e-25	508 - 567	100	60 / 60	minus
Harvest35	U35_18532	783	3e-25	508 - 567	100	60 / 60	minus

Contig Sequence (783 bp)

>U35_18532 783 Hv_44K_v2
TCCTCGTCCACACACGCCCATCGATATCTCTTCTTCTCCCGCTCCTACCAGCACCAGCCA
AGTACACACGGCAAGGAAGCCAAGAAATACAGTTCCTACTCCTCCTCCTCCCCTGCAGTT
GCTCCTCCGTTTCCGGTTAGCTAGCAGTCTGCGCACCAAGGGAAGGGAGATTCTTGGGTT
GGTTTTTCGGCGAAGATGGTTTCCCCCATCGTGATCGCGTCGGCGGGGCTCGGGATGCTG
GCGGGCGTGGCGGTGGCGAACCGGGCTACGGGCGACGGGCTGCCGGCGGCGTCCAGGTGG
GACGCCCGGCCCCGTTGCTCCACGTGCAGCGGCACCGGCCGGGAGGAGTGCCTCTGCAGC
CGCTGGTCCGACGGCGACGTCGGCTGCGGGACGTGCTCCGGCTCCGGCCGCAAGCGGTGC
CGCAGCTGCGGAGGCTCTGGCACCGGCCGGCCGCTCCCGGCGCGGCTCATCGTCCAGCAG
CAGAAGCTGCCGACCGCGCGCGGGCGAGGCGGGGACTACAACTGATATTCATCGGTTTCC
ACGAGGAAATCGTAAGTGTAATTAAGCAGAACATAGCACACCCGTATATGCAACGCGTCC
ATTTCTGTGTATGTTTATACGTTGTCTCCTTCAAAGAGTAACTAGTTAAGTAGTTATAAA
AAGTCCTTGGGACCATAGATTTGGCAGTAATAAGGACGAAAGCATGCATCAAACAGTTTC
GAGCTTCCTTGGATTCAAAGAAATTTTACAGAATTTTCGGAGGATTTACAAAAAAAAAAA
AAA

Homology of Contig U35_18532 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None