barSeed - Barley Seed Development Database

Probe CUST_10660_PI390587928

Source Contig U35_32829

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10660_PI390587928	Hv_44K_v2	TTGTAGCTTTGATTGCACACATTTGTTGTGGAGATATCCGGGAGATCATTAATGTAGTCC	596	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60041.3	1525	2e-24	1250 - 1309	100	60 / 60	plus	ABC13096
JLOC1	JLOC1_39124.1	1543	8e-25	1268 - 1327	100	60 / 60	plus
Harvest21	ABC13096	1276	3e-25	1168 - 1227	100	60 / 60	plus	ABC13096
Harvest35	U35_32829	659	3e-25	597 - 656	100	60 / 60	plus
Harvest35	U35_1802	1398	3e-25	1177 - 1236	100	60 / 60	plus

Contig Sequence (659 bp)

>U35_32829 659 Hv_44K_v2
TACTGAAACCTCATTTCATGTCATAGCATCGCCAGCGACGACTCGGTCACACGACAAGCA
AAAAATGGATAATGGTAGCAGAAATCCAAACAATGGTGCACCCAGAAAGGGGCAGTCTGG
TTGTTGAGATGTACTAGTAGACAGTATGATGGCACAGGGTGCTGCTCTATGAGCAGGAGC
TGCCTGCTTTGCCTGATGGCAGGCGGAGGCGATCAGATCTCGTAGTTCCACGTGCTCTCC
GCTACGAGCTTCGGTGCTTTGCTTTGATCGGACAGATCAAACGTTGTCGCAACCTTGAAG
GAGCCGCCGATGCTGGAGCTCCTGGTCCAGCGGCCGCTGGTGCCGTGGGTCAGAATTTTA
TCTTCCTAACCATCAGCCGATTCGGTTCTCTTACTAACACTACCATCACCGCCACCCGCA
AGTTCATGAGCATCGTCATCTCATCAGTTATCAGTGGTAACCCACTGTCCATGGAGCAAT
GGGGAAGTGTTGTGATGGTCTTTTCTGGCCTCTCTCTCCAAATATATCTCAAATGGAAGA
GAAAGAAGGGCAGAGATCACAAGGAATGAACTTGGTTCTTATAAGTACATTTTGATTTGT
AGCTTTGATTGCACACATTTGTTGTGGAGATATCCGGGAGATCATTAATGTAGTCCGTT

Homology of Contig U35_32829 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None