- Probe CUST_10652_PI390587928
- Source Contig U35_44807
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10652_PI390587928 | Hv_44K_v2 | CTTCTTTCTTTTGGTTTGTCACGCCTCTTTAATCAGATGTTTTGGATTGATCGATTATAG | 44 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.490 | 1.616 | 1.146 | 0.665 | 0.207 | 0.220 |
| Raw | 439.064 | 732.273 | 456.751 | 420.722 | 44.653 | 52.147 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK374966 | 2324 | 2e-24 | 2244 - 2303 | 100 | 60 / 60 | plus | ABC42964 |
| MLOC | MLOC_38133.1 | 1594 | 2e-24 | 1485 - 1544 | 100 | 60 / 60 | plus | ABC42964 |
| JLOC1 | JLOC1_24772.1 | 1447 | 8e-25 | 1350 - 1409 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC42964 | 565 | 3e-25 | 45 - 104 | 100 | 60 / 60 | minus | ABC42964 |
| Harvest35 | U35_44807 | 565 | 3e-25 | 45 - 104 | 100 | 60 / 60 | minus |
Contig Sequence (565 bp)
>U35_44807 565 Hv_44K_v2 TTTTTTTTTTTTTTTTTAATTATGAATGAAAATCCTTTTATAAACTATAATCGATCAATC CAAAACATCTGATTAAAGAGGCGTGACAAACCAAAAGAAAGAAGCAAAAAACTTGTAGCC TTGCTTGCCAACACAAGTTGACTGACAAAATGGGAGTCTTCACCTTCAAATTTTCAAGTG ACTGCACAAAGTACTGCTACCCTTCAGCTGCCATGGGAAAATTTGCAGCTTCCCTCATAG GGGCACCACAACCCTTGCTGGTAGTAGCGGCAGGCCTTTGGTGCTGGAAACTGCTGGGCA TGGTTCTCCTGGGGGTGATACTGGTTGTGGTTCATTCTCCAGCTATCGTGCCCATTCTGA TGATGGGTCTTTTGGGGCTGATACTGGTCCTGAATCATTTGCCCATGACCATACTGATTG TGATGATGTCTCCCTTGAGGATTGTACTGCTCTCGAGTCGTTTGCCTATGATCGCGATAA TCCCCTTCTTGGTTTCTTGAAGAGAAATCCTGAATTCTAAGCCTGAGAGGTTGATGCCAT TGGCTATCAACGTGAGCATATGGAT
Homology of Contig U35_44807 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |