barSeed - Barley Seed Development Database

Probe CUST_10649_PI390587928

Source Contig U35_20850

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10649_PI390587928	Hv_44K_v2	AAATCTTGCACGCTGGGTTGCAAAATTCGTTACTATGATCAGGGACCCCTTCGGTTATCA	1789	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.767	1.878	1.253	0.684	0.292	0.342
Raw	5344.720	8587.627	5197.830	4344.093	665.324	849.001

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_48304.1	904	8e-25	713 - 772	100	60 / 60	plus
Harvest21	ABC13614	1905	3e-25	1790 - 1849	100	60 / 60	plus	ABC13614
Harvest35	U35_20850	1905	3e-25	1790 - 1849	100	60 / 60	plus

Contig Sequence (1905 bp)

>U35_20850 1905 Hv_44K_v2
GTGAACAACCTGTATCGTCATACAGCATTGCAGTCTAGTTTTAGCTGCAACATGGTAGCT
ATTCTTGATGGGCATCCAAAACTGATGGGACTGAAGGAAATTCTTCAGGCGTTCCTTGAC
TTCAGATGCTCTATTATTGAAAGGCGTGCAAAGTTTAAGCTTTCACAAGCTCTAGAAAGA
AAGCATATTGTGGAGGGCATTGTCATTGGTCTTGACAATTTAGATGCTGTAATTCAAGTG
ATAAGAGAAACATCAAATCACACCGTGGCAAAGGAAGCTTTAGCAAAGGAATATGGTCTA
TCTGAGAAGCAAGCAGAAGCACTTTTGGACATTACACTAAGGAAACTTACTTCCCTTGAG
CGTAAGAAGTTTATTGATGAAGCTAATTCTTTGTCGGAGAGCATTTCAAAGTTAAATGAG
CTCCTGTCAAGCAAGAAACTTATGTTTCAGCTTATCGAACAAGAAGCAGCTGACTTAAAG
AGCAAATTTGCTACCCCACGACGTTCTTTCCTAGAAGATTCAGCAAATGGTGAAGTTGAT
GATATGGATGTTATTCCTAACGAAGAAATGCTTTTGATTCTTAGCGAGAAAGGCTATCTT
AAGCGGATGAATCCCAACACCTTCAATTTACAAAACCGGGGGACAATTGGAAAATCTGTT
GGAAAGATGCGAACGAATGACAATATGTCGGATTTCATTGTCTGCCAAACACATGACCAT
GTTCTTTATTTCAGTGACAAGGGGATAGTATACTCTGAACGTGCTTACAAGATACCTGAA
TGCACAAGAGTTGCTGCTGGGACTCCATTAGTACAGCTGCTCAATTTGTCTGATGGAGAG
AGAATAACCTCCATTGTTCCTGTGAATAAATTTGTTGAAGACCAATATTTAGTGATGCTG
ACTGTTAACGGCTATATCAAGAAAGTTCCTCTTAATGCCTTCGCGTCAATCAGGTCAACA
GGAATCATTTCAATGCGCCTGGTTCCCGGCGATGAGCTCAAGTGGGTCCGTCTCTGTAGG
GATGACGACCTTGTTGCTTTGGCTTCACAAAGCGGGATGGTTATAGTGAACACATGCAAC
AAGCTTCGTCCGCATGGAAGAACTACAAGAGGTATGGGTGCAATGAGGCTAAAGGAGGAT
GACAAGATGGCAGCCATGGATATAATTCCATCCACAACCCATACAATGCCTGGAAAAACT
GTCAGCAGGGTCAGAGACTTGAGTCCTCCATGGCTGCTCTTCATAGCTGATAATGGTTAT
GGGAAGCGTGTGCCCCTAAATGCTTTCCGTCAATCAAGCTTCAATAGAGTAGGCTTGCGA
GGCTACAAGCTTCCAGAAGATTGCCGCTTAGCTGCTGTGTTTGTCGTCGGGGAACCGACT
GATGACGATGCAAGTGACGAGCAGGTTGTTTTAGTTAGCCATGGTGGCACTATAAACAGA
ATCAAGGTCAAAGATGTATCCATCCAGGGTCGTGGGGCAAAGGGAGTAATTCTGATGAGG
CTGGAGCATGCTGGGAAGATCCAGTCAGCTTCACTGATATCAGCTGCAGACGAAGAAGAG
ATCTCGGAAGAATGATTCAACTTACATTACAAGATGGAAGAGGCTAGTAGGTCCTGCTGG
TTCGTGTTGCATCCCAAGCTGGGGAGAGCTGCAAATTTTGTTGTGTTGGGTGGCTCATGC
TGTTCTCCAGTAGAAGCTAGGAATCACTCTGTATTCGGAGGGGTAGAACTCTGGCTGCCA
TTAACGTGTGTAAAACTGATGTAGTCATCGTGCCATTAGCAGTCGATGTAAATCTTGCAC
GCTGGGTTGCAAAATTCGTTACTATGATCAGGGACCCCTTCGGTTATCAGTGCTCCCGCC
TCCGGCATCTATCCCACTTGGTGTTGAGTGAAAAAAAAAAAAAAA

Homology of Contig U35_20850 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi1g04210.2	912	0.0
Arabidopsis v10	AT3G10690.1	950	0.0	\| Symbols: GYRA \| DNA GYRASE A \| chr3:3339612-3346243 REVERSE LENGTH=950