barSeed - Barley Seed Development Database

Probe CUST_10647_PI390587928

Source Contig U35_20853

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10647_PI390587928	Hv_44K_v2	TGTGCTGCTGTACATACAGTGTTCGTGTAAGAATTTACAGGTGAGAACTTAATGAAAAAA	971	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.051	0.079	0.328	2.308	3.330	5.698
Raw	2.610	10.556	47.655	516.325	248.830	475.846

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66365.1	1194	3e-22	900 - 955	100	56 / 56	plus	ABC20048
JLOC1	JLOC1_43721.1	947	1e-22	829 - 884	100	56 / 56	plus
Harvest21	ABC20048	781	3e-25	12 - 71	100	60 / 60	minus	ABC20048
Harvest35	U35_20853	1042	3e-25	972 - 1031	100	60 / 60	plus
Harvest35	U35_20852	623	5e-23	39 - 94	100	56 / 56	minus

Contig Sequence (1042 bp)

>U35_20853 1042 Hv_44K_v2
GGTCAAGGCACTGAAGTAAATTAAGTGCTTAATGCGACAGATAAACATATGCGTTTACAC
CTAATTAATCCCCCACAAAGAGTGCGTCCCACATCGACCTTTGGATCACCATCTCTGCAC
CTTTTTCTCTCACGTCGATCGGCCGCAAGTGGAGACGGAGGTCGATCGCGTCGTGTGAGC
CGTGAGCTCGCTCGCCCCCTTTATCACACGCTGCACACCGCGCGTTCATGCCACCTCCAC
CCACTTGTAAAGCGAGACAGCCCCTCTCCCCTCTCTCCCTCCCTCTGTCATCCATTTCTT
GCTGCTTTGATCCAAGCAAAAAAAGGGAAAGCTATAAAGATGGCGAGGCACATCCAAGCC
GATCACGAGTCCGCAGATGACATTGGTGGTGGTGCTGGTGCCGCGCTCGTGCTGTGGGAC
TGCGGCAGCGCTCTCTACGACTCCTACGAGCTCACCTCCTTCAGGCGCCAGCTCGACGCC
ACCGTGCTCGCCTGCCGCTCGCTCTCCATGCCGCACCTCCCCGCTGCCAGCCAAGCCGTT
CATCCTGCCGGCCGCAGGAAGCGCGCGAGGCGGCTCCCCGCCCTCCTGCGGAAGCTATTC
TCCAAGGTGCTACGGCTGGCGTCGGCCCGTGGCGCGAGACACGACCGCTACCGGGCATAC
GAGGGGTACGGCCACGGCGGCTACAGCGGCACGGGGTCGCCGTGGTCCGGGGCGCTGACG
TCCATCCCGGAGGAGAACGGCGGCAGCCCGGAGGCCAGGTCGTCCCCGGTCGTCCCGGGC
CCGAGCGCGCTGCGCAGGGCTCAGTCGGAGCGGTTCATCGGCGGCAAGACGGCGAGCCCC
ATGGTGCAATTCGACGTCGTCTTGAAATAGTAGCTCGTATGTGCATGCTATTAGTTACTT
AGGTATCAGACCATGACAAGCTAGTCAGATGCCTGTATACTGCAGAATATGCAGTCTGCG
GTGAGTTCTTCTGTGCTGCTGTACATACAGTGTTCGTGTAAGAATTTACAGGTGAGAACT
TAATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_20853 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None