barSeed - Barley Seed Development Database

Probe CUST_10646_PI390587928

Source Contig U35_20854

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10646_PI390587928	Hv_44K_v2	GATACTACAGGCTCTGGTACATTTTTCTGTAACTAATCCTATATCAGTCCAAATACTATC	1757	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.418	1.598	1.098	1.011	0.344	0.499
Raw	166.743	304.096	179.644	264.197	30.442	49.280

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5085.2	6398	2e-24	6261 - 6320	100	60 / 60	plus	ABC15496
MLOC	MLOC_5085.3	7249	2e-24	7112 - 7171	100	60 / 60	plus	ABC15496
MLOC	MLOC_5085.1	1648	2e-24	1570 - 1629	100	60 / 60	plus	ABC15496
JLOC1	JLOC1_3240.1	1701	8e-25	1559 - 1618	100	60 / 60	plus
Harvest21	ABC15496	817	3e-25	755 - 814	100	60 / 60	plus	ABC15496
Harvest35	U35_20854	1843	3e-25	1758 - 1817	100	60 / 60	plus

Contig Sequence (1843 bp)

>U35_20854 1843 Hv_44K_v2
AGGGCGAATTGGGCCTTCAGATGATGCTCGAGCGGCCGCTCGTTGCTATTCCCTATTTTT
CATCGTCTACGTGCTTTTGGGAGTATACTTCCTGACAAATTTGATTCTTGCTGTCATCTA
TGATAGCTTTAAGGAACAGTTCGCAAAGCAACTTGTTCAGGTGGACGCTATCAGGAAAAA
TATATTACAGAAGGCATTTGATCTTATCGATACCAACACTCGGGGTTACCTCGACAGGGA
ACAGTGCATATCATTGCTTAATGAGCTGAACAAGTACAGGTCCTTACCAAAAACCTCAAG
GGAAGATTTTGAGTTAATTTTTGCCGAGCTTGATCGAAGTGGTGATTTCAAGGTTACCTC
CGAAGAATTTGCTGACCTATGCAATACCATTGCAATAAAATTTCAGAAAGAACCGCCGCC
GTCTTATCTGGAAAAGTTCCCATTCTACCATTCACCAGTTTGTGGAAGGTTGAAATCTTT
TGTGCGGAGCCGCACGTTTGAGTACATTATTGTTTTTGTTCTTCTGATAAACCTAGTTGC
CGTCATTATCGAAACAACGCTTGATATAGAAAACAGCTCCTCACAGGAAACGTGGCAGGA
AGTAGAGTTCTTTCTTGGATGGATTTATGTAGCTGAGATGGCACTAAAAATATTTTCATT
AGGATTTGGTGCTTATTGGATGGAAGGCCAAAACAAATTTGATTTTGTGCTTACTTGGAC
TATATTTATTGGAGAGACTCTAACGTTTGCCTTCCCGTCAAAGCTTCCCTTTCTTTCAAA
TGGAGAATGGATTCGGTATCTTCTCCTTGGAAGGGTGTTGCGCTTAACAAGAATTTTGCT
GCAAGTTCAACGTTTCAGAGCATTTGTCGCGACATTCTTTACCCTGATGTCTAGTTTGAT
GCCATATTTGGGGATAGTATTCTGTATTCTTTGCATGTACTGCTCCCTTGGTTTGCAGAT
TTTTGGGGGCANTTGTGTATGCTGGAAACCCAACACTAGAAGAAACGGACCTCTTCAGTA
ATGACTATCTTCTTTTTAACTTCAATGACTATCCAAGTGGTATGGTTACTCTGTTCAATT
TGTTAGTGATGGGCAATTGGCAAGTATGGATGGAGAGTTATTGGCAACTGACTGGAAGTT
CTTGGAGCCTGATTTATTTTGTCAGCTTTTACCTTATTTCAATATTACTACTGCTTAATC
TGCATTTGTATTGGAGGCATTTTTTGCTGAGATGGAACTGGAGAAAGGTGAAGAGGTTGA
TATCCAGAGTCCTACGTCTGGAGGAATAAAGAAACGTCGGTCTATGCGTGTGAGGTCAAA
GGGTACGATGGTTGATATTCTTCTGCACCATATGCTGAGCAATGAACTTGATGGATCTCA
AAACTCTTGATCAATGACTGGATGGAAGCAAGAAAATACACGAGCGCCTTCCTGATGAAA
ACGTACATGAATGATTACAACCACCATATTCCCAAGCATGGAGTGTGTAGCAGCCACGAT
AAATTTTTGAGTAGAGCTGTGACGGACTCGATTTGCTTCCTCTTTCATCATCAAGAAATA
CATCGAATATGCGTACTTGGAATATGCGTATTTGTGTCGGGTCGATTTTATACTGCTGTC
TGTCAGTCTGGTAGAGTTTTATATACTCTGTCTCAGTCAGCATACCAACAAGCAACTAAA
GAAGAGTTCAAGTCACCACTTCAAAGTGTAGTCAGCAACTTGTATAAAACAAAAGGAACT
GTACTGGAAATCAATATGATACTACAGGCTCTGGTACATTTTTCTGTAACTAATCCTATA
TCAGTCCAAATACTATCAATATGATACTAAAAAAAAAAAAAAA

Homology of Contig U35_20854 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g48680.2	758	0.0	protein\|two pore calcium channel protein 1, putative, expressed
Brachypodium v1_2	Bradi2g46510.1	743	0.0
Arabidopsis v10	AT4G03560.1	733	2e-138	\| Symbols: ATTPC1, TPC1, ATCCH1, FOU2 \| two-pore channel 1 \| chr4:1580253-1585691 FORWARD LENGTH=733