barSeed - Barley Seed Development Database

Probe CUST_10637_PI390587928

Source Contig U35_18542

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10637_PI390587928	Hv_44K_v2	CTAATTGCCATGTTGTAACACCACCAACCTTAATAAAATTATGTGGGATTCCTGACAAAA	1185	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.114	1.394	1.102	1.112	0.469	0.465
Raw	2684.310	5218.920	3603.007	5841.333	844.425	916.482

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_11168.3	1334	1e-22	1190 - 1245	100	56 / 56	plus
JLOC1	JLOC1_11168.1	1704	1e-22	1560 - 1615	100	56 / 56	plus
Harvest21	ABC10279	1257	3e-25	1185 - 1244	100	60 / 60	plus	ABC10279
Harvest35	U35_18542	1259	3e-25	1186 - 1245	100	60 / 60	plus

Contig Sequence (1259 bp)

>U35_18542 1259 Hv_44K_v2
CACGCGTCCGCCGGCGCAAGCTGAAACCCTCGGGCCCCGACCGCGGCAGCCGCCGATCCA
GCCCCCGCCGCGATGGAGTTCGCCCTCGTCGACGGCGAGCAGTTCTCGACCTCCTGCTCC
ACGCTCGTCATGCCCGCGCTTTCGATCGGCAACGTGGGGCAGCTCGCCGTGGACCTGCTG
ATACCGTCGGCGAAGGCGAGGCGGGTGGCGTACCTCGACGAGCCCTCCGTGCTGCCCTGC
GTCGGCAACGACGCCTTCGGCCCCGACGCCGTCGGCGACCTCGCGCTCGCGCTCGAAGAG
TATGAATCAATGTCTCATGGGCTGGCTTTCATTCAACAAAGGTCTCCAATTGTTACAGGG
ATGATGGTTTCGTTTGCAAAAAATGTTGCTAATTTCATCAGTAGCATTGGGAAGGACCAT
GTTGTTATTCTTTCAAGTTTAGACTCTGGCAAGAGAAGAGTAATTGATGCATCCAGTGAT
ATGCTGTATTACCTTTCAAGTTGCAATGAGGATGGTTCTGATCCAGAATGTGAGAAACTA
GGGTGGAAGAAACTTGAGGAATATGATCCATCTCAGCGACTGTGGAAATGTCTTGCTAGT
CTAGTTGAGGGCGGTGTTCTTTCAGAAGATATGGCTGAGGATCCTGAAGAGATGACCGCA
AGTGATTACTATGCGACCTTGCCATTTGCAGCTCTATTCTTTGCCTGCAAGGCCAAAGGT
TTGAAAGTTAGCTGTGTATTATGCTACTGTTCAGAAGGGGACAATATGCCAGAATCTTTC
CACTTAGCAGAAGCAGTATGCAAACTTCGAGGTCAAGACCCTGAACAATTCCACGGAAAT
GGGTCAAATGGATGGACTATTCCCTTGTCATGGAAATCAATTTATGGACCACCTCCCGAT
ATGTCTATTTTCTAGACTGACTGACCTAGTGAGGTTGCAATCATGGACAGCGCTGTATCG
AGGATGAGGAAGGATATTAGCTTCAGGTTTTTGTTTTAGCGAGAAGATATTAGCTCTAGG
TTGTGTACCAGAAATCCCCAGGATGGTGAGTCGCCGACCCTCTTTCGTCAAGCAACAAAC
AGTATTCACCCGTTTAGAACTGTTGGAGGCATCGTGGTACTTGGAACCTGGAATTTATGT
GTCCTTACAAAGTCGTATCCGTCTTGGTCATTCAACTCGCAGCAACTAATTGCCATGTTG
TAACACCACCAACCTTAATAAAATTATGTGGGATTCCTGACAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18542 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55784.1	282	1e-172	protein\|tumor necrosis factor superfamily, member 5-induced protein 1, putative, expressed
Brachypodium v1_2	Bradi1g07490.1	281	0.0
Arabidopsis v10	AT3G18940.1	281	1e-103	clast3-related \| chr3:6527081-6529050 REVERSE LENGTH=281