barSeed - Barley Seed Development Database

Probe CUST_10634_PI390587928

Source Contig U35_18545

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10634_PI390587928	Hv_44K_v2	TGTCGAGTGAATTGTAAAAAACCACCACATTTAAAGTTTGCATCCGGATTTGCCACCAAA	1307	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.546	6.338	1.284	0.691	0.661	0.587
Raw	68.871	108.507	18.858	15.782	3.803	2.828

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5491.1	1437	3e-22	1 - 56	100	56 / 56	minus	ABC09948
MLOC	MLOC_5491.2	1397	3e-21	1344 - 1397	100	54 / 54	plus	ABC09948
JLOC1	JLOC1_3533.2	1395	1e-23	1302 - 1359	100	58 / 58	plus
JLOC1	JLOC1_3533.1	1461	1e-23	1368 - 1425	100	58 / 58	plus
Harvest21	ABC09948	1381	3e-25	1308 - 1367	100	60 / 60	plus	ABC09948
Harvest35	U35_18545	1381	3e-25	1308 - 1367	100	60 / 60	plus

Contig Sequence (1381 bp)

>U35_18545 1381 Hv_44K_v2
ATCCACCCTCCACCACCCCGCACCCCCATCCCCAGGAGCGGCCATGGCCATCCGCGTCTT
GTTTCCCCCCTCCTCCTCCTCCTCCTCCTTCTCCACCGCACACGCGACGCCGACGCCGAG
GGCGAGGGCGAGGGCGAGGTGGACGAGCAGACAGAGGCTGTTGTGCTGCTTCTCTTCAAG
CACAAGCAGCAGCGATGAGGTGTCATCATCCATGACGGTGTCCATCACCGGAGCCACCGG
GTTCGTCGGACGAAGGCTCGTGCACAAGCTCCTATCCGAGGATCACAAGGTGTGCGTCTT
GACACGCTCAACCTCCAAGAACAAGGCCGCCTCTCTTTTCCCTGCTTCGCGGTATCCGGG
CGTGACCATCGCGGAGCAAGAGGAAGAGTGGGAGCGATGCATCAAGGGTTCCACTGGTGT
TGTCAACCTCGCAGGAATGCCAATCAGCACCAGGTGGTCGCCACAAATTAAGAAGGAAAT
TATGCAGAGCCGAATCAATGTCACCTCAAAGGTTGTGGATCACATCAATAGTAGCACCAG
CACTAGTTCCCCTCAACCTGAACATGAAGCCAGCAGCAATGCCAATGGCAATGGTCCCTC
TGTTTTCGTCAGTGCAACAGCCGTCGGCTACTACGGCACAAGCGAGACCGACAGCTTCGA
TGAATCCAGCCCATCAGGCAATGACTACCTAGCACAGGTGTGTCGAGAATGGGAGGGACG
GGCACGACAAGTGAAGCAGGAGCACGTCCGGCTGGTGCTCCTTCGGATCGGAGTCGTCCT
CGGCAAGGACGGCGGTGCTCTGGCCAAGATGATCCCCCTCTTCATGATGTTTGCCGGCGG
GCCGCTCGGCACAGGAACACAATGGTTCTCTTGGATTCATTTGGATGACCTGGTGGATCT
CATCTACGAGTCCTTGAGGAACCCGGCATACACCGGCGTCATCAACGGCACGGCGCCCAA
CCCGGTGCGTCTGTCGGAGCTGTGCGACAGGCTGGGGCAGGTGGTGGGACGCCCGTCCTG
GCTGCCGGTGCCGGGGCTCGCCATCAAGGCCCTGCTAGGAGAAGGCGCCACGGTGGTGCT
AGACGGCCAGAAGGTGCTCCCGGCCAGGGCCACCCAGCTCGGCTTCTCCTACCGCTACCC
CTACGTCCGAGATGCGCTCAAGGCCATCGCTAAACAACTCTAGTTCTATTTAATTTCTTA
CACCTTATCTTTCTTTTCTTTTCTTTTCTTGTAATGTATGTATACTAGCACCCTCCATAC
GGTATTTTTGCAAATTCATCTCCAGATTGTTGAGCAGTAAGGAACATTGTCGAGTGAATT
GTAAAAAACCACCACATTTAAAGTTTGCATCCGGATTTGCCACCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_18545 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g58790.1	360	4e-160	protein\|cell division inhibitor, putative, expressed
Brachypodium v1_2	Bradi3g60920.1	350	1e-167
Arabidopsis v10	AT2G21280.1	347	4e-135	\| Symbols: GC1, ATSULA, SULA \| NAD(P)-binding Rossmann-fold superfamily protein \| chr2:9110502-9112679 REVERSE LENGTH=347