barSeed - Barley Seed Development Database

Probe CUST_10632_PI390587928

Source Contig U35_18547

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10632_PI390587928	Hv_44K_v2	TCTTTGACATTGCTGGGCACATCTGCAGCTTTAACATACTATGATTTAGCCGTGAAAAAA	2099	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55982.1	5974	9e-22	219 - 273	100	55 / 55	minus	ABC10334 ABC21143
JLOC1	JLOC1_36160.1	5919	5e-22	5558 - 5612	100	55 / 55	plus
Harvest21	ABC10334	1243	3e-25	1171 - 1230	100	60 / 60	plus	ABC10334
Harvest35	U35_18547	2172	3e-25	2100 - 2159	100	60 / 60	plus

Contig Sequence (2172 bp)

>U35_18547 2172 Hv_44K_v2
CTGATGTTAACAAGCTAGTTGTATTCCCAGTTGATGTGCCGAATGGGATTAAAGAATCAA
AGGATAGTTCCAGTGAATCGAGTAGTCAAGTAAAATCTGGACCTATCATATCTCAGGATA
TTGAGCATGATGCAAGGCAGAGTCCAAAGAAGCTGAGCGATGATGTTGGCGGAAAAGAGG
TTCTTGCCTCATCAGACGAGGGTACTTCTATTGCTGCCAAGGCCAAATCAAATGGTACTG
CTAAGCTTGATTTTGATTTGAATGAACTTGGGGATGAAGGGAATCACTCTGAGCAAGTTA
CCTCTCCTGTTATATGTTCTTCTGCAATTCCTGTACCTGGTCTTTCTCCATTCGTATCAC
CTGTTTTAAGTGGTCTGCCTGCCCCAATAACAGTAGCAGCTCCAGCTAAAGGACCTTTTG
TCCCTCCTGAGAATCTACTACGAGTGAAGCCTGAGGCTGGGTGGAAAGGCTCAGCAGCTA
CAAGTGCATTTCGTCCTGCAGAACCACGAAAGGTTGTGGGGGCATCTCTGACTGCACCTG
ATATTGCAGGATCTGATAGTGCCGGGAAGCGGTCTCGCCCCGCGTTTGACATTGATCTGA
ATGTAGCAGATGAAGAGATTCTTGAGGAAGATTTCTCACAGAGTTCTGCTCAGACAGTTG
GATCTGAATCTGGAAACACTAGAAGTCGTGATGGTCCTGTGCGAAGCGCCGGCATTGAAC
TTGACTTGAATAGGTCTGATGAAGTTGCCGAGAATAACCAGTTTATCTCAAACTCTTCCA
ACAGAGTTGAAGTCACATTGTTGCCAGCAAGATCCTTGCCAGGAGGTTTACCGAGTACCA
GTATGAATAGCTCAAAGAACTTCTTTGATCTCAATAATGGACCAAGCCTTGATGAAGCTA
GTACAGAACCTGCACAAAGGAGTCTATCATCTAAAGGTGCTAGCAGCATACCTTTCCTGC
CTCCAGTTGCTGGTCTTAGAGTGAACGGCACTGAAATCAATAACATGTCACCATGGTTTG
CTTCTGCCAACCCATATGCTCCTGTAGCTATGCAATCGTTTTTGCCTGCTAGAGGAGAAC
ATCCTTACCCAATTGAAACAGCATCTGGAACCCAGAGGATGATTGTGTCTGCTGCAGACA
GCAGCCAATTCGGAAGTGATTCAGGCAGGGCTCCAGTTATTTCCACACCACCAACCATGG
TGTTTCACCCTCCTCCTGCATATCAATATGCAGGATTTCCTTTCACTCCCAGTGTTCACC
TTCAGACAACAGGTTTTCCAATTGGATCGACGTCATATGCCACCAATTCTGCACCTGCAG
GAGTTCCATTCTTTCCAACCATTGCCCCGTCACTTGTTGGGTCAACGGGTGCATTACCTC
CCCAACATGTGAGGCAATATGCAATAAACCGTCCTGAAGGTAGCAGCAGTGATGGACTCG
ACAGTAACTGGAAATGGAAAAGACCAGGAGGAGGGTTTGATCTTAATTCTGGTCCTGGGA
GTATAGATTTAGAAGGGAAGGACGAACGGATACTTTCATCGGTTAGACAAACTTTGATGA
CGCCGCCGCAGGCCTTTGTGGAGGAGCAAACGAGAATGTACCAATTGCCTGGTGTAGGAA
TAAAGAGGAAGGAACCCGAGGGCAGTTGGGATCCTGAAAGATCATCATACAAGCAATTGT
CATGGCAGTAGGAACTTTGGCGAGACCTCGCATCGACTTCTTTTGTCTGAGGCAACTGCA
TGTGGAAGTGAGGCGTTGTATTGCACCTGGGTGACCCTGGTGGGCTGGGATATACAACTC
ACACATGGATTCATGTCTGTGACGACATGGGATTGTGGGAGGAATGAAACATGGCTGTAA
TTGCTGTAAATGTTAACCATATTCATACTTTCCTGGAACCAGTTTTCCTCAGCTTGAGCA
GTTGCTTTGCTAGAGTTTTGTACCTGCCAGGCTTGCTTCTTCTGTTTTTGCCAGGAGCGT
ATGGGTTTGGAGATGGAACGGTAATGCTCCTTGGCATCTTCAAACACCTCAAGCCGCTGT
AATTAGTCCCGGTGGTCCTTTTTTCTTTTCATTTTCTAAGTTTCTTATGATAAACCGTCT
CTTTGACATTGCTGGGCACATCTGCAGCTTTAACATACTATGATTTAGCCGTGAAAAAAA
AAAAAAAAAAAA

Homology of Contig U35_18547 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50850.2	905	0.0	protein\|BAH domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g59577.1	1626	0.0
Arabidopsis v10	AT3G48060.1	1611	2e-95	BAH domain ;TFIIS helical bundle-like domain \| chr3:17743234-17748372 REVERSE LENGTH=1611