barSeed - Barley Seed Development Database

Probe CUST_10631_PI390587928

Source Contig U35_44

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10631_PI390587928	Hv_44K_v2	AGAGAAGTAGTTCTAGAGCTAAGAGAAGATAAACCTTAGGGGCCGTGTTTGCACCATAGC	986	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.600	1.632	1.140	0.795	0.407	0.453
Raw	1684.913	2701.869	1654.040	1762.017	326.469	389.647

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_1072.1	992	1e-23	728 - 785	100	58 / 58	plus
Harvest35	U35_44	1318	3e-25	987 - 1046	100	60 / 60	plus

Contig Sequence (1318 bp)

>U35_44 1318 Hv_44K_v2
ACAACCGCTTGGTCTAAATTTATTTGTCGAATACAAATATGTCTAGGGCAACGATATCTT
AATACAGCAGAAATTTACAAATGAACGACACAACACCAGCTAACTGATAATGATCCTCCT
GTCCAATGCTACACTTCTTACCGATACAGCGGAACAATGACACACAAATGAAGCGGCGGA
TTCAGGTTTCAGACATCCATTTAACATCAAGAACAAATGGGCTGAGCGAGTAATACCGAA
TTCACCCCAATCCTGGAAGCATCTGAACCGGATCAAGCATTTGGATAGCAGCTTGTTGAT
GTTGCTGGTGTGGCTGCTGATGGTGCTGCTGGAGCATGAACTCCTCGCCAGGCGCAGGCA
TTGCAGGTGGCAGCGGCCGCTCGAGCGTGTCAAGGAACAATGGAAAACATCCAACAACAC
CCCTGGTAAGAGAAAAGATAGGTCCAGGCATGAAGATGAAGATGGGGACAGTGGCAAGAG
GAGGAAGAAGGGTGGCAAGAGGAGGAAGGATCAGAAGACAAGGATGCAATATGAGGACGA
TGAAGAAGATCAATACAGAAATGAACCAGAAGAAGATGATTATGCAAACATGGCAAGAGA
TCCTGGTGGTGACAAACCAGAGAAAGCCCCAGATCACCTTCTTGCGGCTGCTGGTCTTGA
GGATTCTGACGCCGAAGATGAAACGGGTCATTCTCAATCCGTGATGGAGCGGAAGAGACG
AGCATGGTCAGAATCTGATGACGACGAACCGGTGCAGCGATCAGTGCAACCTACTAGCCC
CGAATGATCAGAGTGAATGATTTAAGTAGAAGGACGAATCTCGCTCTTGACAGTTAGGAT
GGACTTGATGTTCATTCGTACATTAGGTTATGATGTTGTTGTAGAGGTCCCAACAGTTTA
ATTTACTTTTGGGCTGTAACAAACTAATTTCCGCGTTTTTTTTTGGTGTGTGTGGAGGGG
ATTTCTTTGCAGTAGTTCTAGAGCTAAGAGAAGTAGTTCTAGAGCTAAGAGAAGATAAAC
CTTAGGGGCCGTGTTTGCACCATAGCGGCCGCTAACAATCTGAAAGATGGAGACTAAGCT
CTAAGCTACGATACGGCTAAAGCAGAGAGAACTTACATATCGACAAAACTGAAGCAGTGT
GTAAGCACTATCCTACTCCATCGCTATGACATAACAAAGTTAAAAAACACAAGCTAGACT
TGATGTCATCATAACTCAAGAAGTGCGAATATTTTGATCAAACAGCGAACCATCATTGTT
GGTCAAATTATCAATGACGACATCTCTAGAGCTCAACTTGCTTAACAATTCTCTTGCC

Homology of Contig U35_44 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None