barSeed - Barley Seed Development Database

Probe CUST_10628_PI390587928

Source Contig U35_47

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10628_PI390587928	Hv_44K_v2	GAGTTTGCTGTACGTTGTACCATGGGCACTTATGGTATATGGATTATAAATTAATCTAGC	679	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15917.1	1490	2e-24	167 - 226	100	60 / 60	minus	ABC00845 ABC00972 ABC41268
JLOC1	JLOC1_10943.1	1183	8e-25	254 - 313	100	60 / 60	minus
Harvest21	ABC30137	597	3e-25	530 - 589	100	60 / 60	plus
Harvest21	ABC00964	856	3e-25	649 - 708	100	60 / 60	plus
Harvest21	ABC00845	753	3e-25	29 - 88	100	60 / 60	minus	ABC00845
Harvest35	U35_352	753	3e-25	666 - 725	100	60 / 60	plus
Harvest35	U35_47	764	3e-25	680 - 739	100	60 / 60	plus

Contig Sequence (764 bp)

>U35_47 764 Hv_44K_v2
GGACCGGGAATCGGCATTACGGCGGGGACCAGTACCAGAAGCAAATCTAGCTATCTCATT
GCCACCCTCTCCCCGTGAGCCCACCACCACAACTGCACCTTAGTCCGTCGAGATGGCTCG
CACTGCAGCAACCAAGCTCGCGCTGGTCGCCCTGGTGGCGGCAATGCTCCTCGTAGCCGC
CGACGCGGCCATCACCTGCGGCCAGGTGAGCTCTGCCTTGGGCCCCTGCGCCGCCTACGC
AAAAGGCAGCGGCACCAGCCCTTCTGCGGGCTGCTGTAGCGGAGTCAAGAGATTGGCCGG
CTTAGCGCGGAGCACCGCCGACAAGCAAGCTACGTGCAGGTGCCTCAAGAGTGTCGCCGG
CGCGTACAACGCCGGCAGGGCCGCAGGCATCCCCTCCAGGTGCGGCGTCAGCGTCCCCTA
CACGATCAGCGCCAGTGTCGACTGCTCTAAGATCCACTGATCGAACACGTGCTCCCCATA
TCTCCAGCGATCGACGCTTGGTAGGTTGAGGTCACATACACATATATACATATACATGAA
TAAATCCTCTGTTATGATCTCCATGAGAGAGAGAGGGGAGGACGTACGCTGAGCCAGCTC
TACATGGCCGCTCACTGTTGTATCGGTTTTGTATCAGTGTTTGATTGTTTGTTCACTCCC
TTTGAGGAGACACATACGGGAGTTTGCTGTACGTTGTACCATGGGCACTTATGGTATATG
GATTATAAATTAATCTAGCAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_47 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None