barSeed - Barley Seed Development Database

Probe CUST_10626_PI390587928

Source Contig U35_21630

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10626_PI390587928	Hv_44K_v2	TCTCCACCTGTTGACGATGTTCATGTGTTGATGATTCAATAGATGTAATTGTTCGTGTAA	516	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61186.1	3013	6e-24	50 - 108	100	59 / 59	minus	ABC39319
JLOC1	JLOC1_39972.2	3054	3e-24	2892 - 2950	100	59 / 59	plus
JLOC1	JLOC1_39972.1	3039	3e-24	2877 - 2935	100	59 / 59	plus
Harvest21	ABC39319	590	1e-23	18 - 74	100	57 / 57	minus	ABC39319
Harvest35	U35_21630	591	3e-25	517 - 576	100	60 / 60	plus

Contig Sequence (591 bp)

>U35_21630 591 Hv_44K_v2
ATTGCATCAAAGAACGCAACTCCTTTGCAGACTGGAAGCGCAAAGACAAGGGCACCAAAA
CCCACCACCGCCTCCTCCACCACGCCGGCTATCCCAGTCGCCGAGCAAGCCAAGCCCGAA
TAAATTGTCTGTTGGTGGTAGAAAGCCAAAGGCTTCTACTCCACACTGGCACTAACCCAA
CCCCAGGTCTCCATCCTCTAGGATCCTGCAGAACAAGATAGCTTTGAACCTGCTAAGGAA
TCAGATGCAACACCATGGCCGAAGCATCATCCGTGCTATTCCCCGTGCCCACGGTTGATG
TTCGCCTGCGGCGCTACCACAACCACCACCACTTTTGTCACCTGTTAACCGTAGTAGTGT
TGTGTACCTACGTGTATCATATCCACTAATGCCGCCGTAGCTCTACTGCCTTAAGAATTA
CTACTACCTAGAACGCTGTAAATACCTGAAATAAATTTGAGCTTTTAGCTGAAGAACGCT
GACACCTGGAAAGCTCGGCAAGTTTAGGGGAGTGCTTCTCCACCTGTTGACGATGTTCAT
GTGTTGATGATTCAATAGATGTAATTGTTCGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21630 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None