barSeed - Barley Seed Development Database

Probe CUST_10619_PI390587928

Source Contig U35_21636

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10619_PI390587928	Hv_44K_v2	AATGTTGTCGCGCTCTCATTTGAGCTAGTACTGTTACCTTTAACATGACTTATCTATAAC	1681	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.242	1.980	1.292	0.659	0.237	0.230
Raw	4476.077	6074.913	3577.130	2830.077	361.669	379.534

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_7329.1	854	8e-25	751 - 810	100	60 / 60	plus
Harvest21	ABC20068	1276	3e-25	1185 - 1244	100	60 / 60	plus	ABC20068
Harvest35	U35_21636	1773	3e-25	1682 - 1741	100	60 / 60	plus

Contig Sequence (1773 bp)

>U35_21636 1773 Hv_44K_v2
CACGCGTCCGGTGATACCGATGTAGATTCAGAATACGATGAGGAGGATGAACCGGCTGCA
CGTTGCTCAGCCAGAAAGAACCAATCTAATGAGAAAATTTTGCCTGCTAATTCATGGAAA
GGGAGGATATATGGCCTGCAAAAGATTGGAATCCGTAAAATACCTGAGCATGTTCGGTGT
CATCAAAAGACTGCTCTGGAGAAGGCGAAAGCTACCTTGTTATTGGCTACTCTTCCCAAG
TCATTGCCTTGCAGGGATAAAGAAATGGAGGAGATCTCGACATTTGTGAAGGATGCAATT
TGCAATGACCATTGTCTAGGACGCTGCCTTTATATTCATGGTGTGCCTGGTACTGGCAAG
ACTATGAGTGTACTTGCAGTCATGAGGAGGTTGAGATCTGAATTTGATTCTGGAGCTCTG
AGGCCCTATTGTTTTATAGAAATCAATGGTCTCAAATTAGCTTCTCCAGAGAATATCTAC
AAGGTTATATATGAACAGTTGAGTGGGCATAGGGTGGGATGGAAAAAAGCTCTTCATTAT
TTGACACAGCACTTTTCAGATGGCAAGAAAATTGGAAAGCAAGCAAACCAGCCAATTGTT
TTGCTCATCGACGAGCTTGATCTCCTTTTGACAAGAAATCAGTCGGTGCTGTATAACATT
CTTGATTGGCCGACCAAGCCAAATTCAAACCTAGTTATTATAGGTATAGCAAACACAATG
GATCTTCCAGAAAAACTATTGCCGCGTATCTCAAGTAGGATGGGTATTCAGCGGCTGTGT
TTTGGCCCCTATAATTATCGGCAACTGCAGGAAATCATAACAAGCCGTCTTAAGGGTATC
AATGCCTTTGAAGATCAAGCTATTGAGTTTGCTTCTAGAAAGGTAGCTGCTATGTCTGGC
GATGCTAGGCGGGCCTTAGAAATTTGTAGACGCGCAGCAGAGTTTGCAGACTACCGTGTT
AAACAATTTCAACAGGTTGAACAGACTCCCTCTTCTGCAAATATAGGAAATGGTTTTGTT
TGCATGGGTGACATAGAAGACGCTATTCAAGAAGTCTTTCAGGCACCACATATTCAAGTA
ATGAAGAATTGTCCAAAATTTGGGAAAGTTATACTGGCTGCTATGGTCCACGAACTATAC
AGGAGTGGCCTAGGTGAAGTATTGTTTGATAAGCTGGCAGCGACTGTTTTCTCTTGGTGC
CACGTCAACAGAGAAATATTGCCCGGATACGATACTCTCCTGAAAATCTGTTGCAAGCTT
GGTGAGAGCAAGATCGTTCTCTGTGAGGAAGGCACCAAGCATAAGTTGCAGAAGCTGCAG
CTTAATTACCCAAGCGACGATGTGACCTTTGCCCTCAAGGAGTCCCCAGATCTTCCTTGG
CTGTCCAAGTACCTCTAAATCTCATACCTGCAGCGGCTAAATTTCCCAGCACTCCATTGC
ATTTCTGCTTCTCTTGGGGAGCAGCAGCCCTGCCTACATGTATAAAACTTAGAAAAGAAA
ACCCTGCACCGATTGCATATCGGTTGCCATGTAAACCAAGAACTCAGCCGTACATCGGCT
TTCTATAGTTGCCATCTCAGAAAAAAAAGGAGTCTCAGTTGTGCGTCGGATTTGTAAGAT
GTGAAAAAACTTGTACTTCTTTTTTCACCACATTTGTGGAACTTGTGTGGGACCCTGTTG
TAATGTTGTCGCGCTCTCATTTGAGCTAGTACTGTTACCTTTAACATGACTTATCTATAA
CATTAAATTGTTATTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21636 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g08790.1	815	protein\|ORC1 - Putative origin recognition complex subunit 1, expressed
Brachypodium v1_2	Bradi1g47050.1	819
Arabidopsis v10	AT4G14700.1	809	\| Symbols: ATORC1A, ORC1A \| origin recognition complex 1 \| chr4:8422236-8424665 FORWARD LENGTH=809