barSeed - Barley Seed Development Database

Probe CUST_10613_PI390587928

Source Contig U35_19320

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10613_PI390587928	Hv_44K_v2	GATGGACCATATTTTTCTTTGAGAACTATCTGATAGACCACTTATGCATCAGTCAACTAA	1841	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.844	4.438	1.492	0.595	0.185	0.262
Raw	1106.131	1125.329	318.988	214.379	21.803	34.736

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61466.1	2144	7e-23	1 - 57	100	57 / 57	minus	ABC16273
JLOC1	JLOC1_40167.1	2325	8e-25	2055 - 2114	100	60 / 60	plus
Harvest35	U35_19320	1938	3e-25	1842 - 1901	100	60 / 60	plus

Contig Sequence (1938 bp)

>U35_19320 1938 Hv_44K_v2
AGCTTCCGTTTTCCAACGTCTCTCCCTCCCTTTCCTCCACCGTCGTCGTGCCTGCGTCGC
CGTCGCAGCAGAGGGTGGGGGCGGGCCATGGCGGAGCACGGCGAGGAGGAGGCGGCGACG
CTCGAGTTCACGCCCACGTGGATCGTCGCGCTCGTCTGCTCCATCATCGTGCTCATCTCC
CTCCTCGCCGAGCGATGCCTCCACTACCTCGGCAAGACGTTCAGGCGCAAGAATCAGAAG
CCGCTCTACGAGGCCATCCTCAAGGTCAAAGAAGAGCTGATGCTTCTCGGGTTCATCTCG
CTGCTGCTGACGGTGTGCCAGGGGAAGATCCAGAATATATGCATTCGTCGTAGCTGGACA
CTCCACATGCTGCCATGCCAAGGGGAGGATGAGGTTCGGGCCGGTGAGGCGGCACCGACA
AACGAGCATTTTGTCACAGCCCAGATCATCGGCAGAATCGGGAGGCGGCTGCTCAGCGGC
GGCGCGGCAGAAGCCGGTGTCTGCCGGTCCAAGGGAAAAGCTCCGTTGATGTCCCTCGAA
GCTATACATCAGTTGCATATTTTCATATTTGTGCTGGCTATTACACATGTTGTATTCAGT
GTTTTGACAATGCTTTTAGGAGGGGCAAAGATACATCAATGGAAACTGTGGGAGGATGCC
ATTCAGAAAGATACTGCAGGAAATGGGCCCAAGAAGGTGAACAATGTACGCAATTTCGAA
TTTATCAGGGAGCATTTTAAGGGTATTGGCAAAGATTCTAGAATATTGAGTTGGCTGCAT
TCGTTTTTCAAGCAGTTCTATGGATCAGTAAGTAAAACCGACTACACCACAATGCGTCTT
GGTTTTATCATGACCCACTGCCGTGGAAACCTGAAATTCGATTTCCATAAATACATGCTG
CGGGTTTTAGAGTCTGATTTTAAGAAGGTGGTTGGGATAAGCTGGTACTTGTGGGTCTTC
GTGGTGATCTTTCTGTTGCTGAATGTTAATGGGTGGCACACATACTTTTGGATCGCATTC
ATTCCCCTTATTCTTCTCCTAGCCGTTGGCACCAAGTTGGAGCACGTCATAGCTCAGTTA
GCCCAGGATGTAGCTGAGAAGCACTCTGCGGTCGAGGGCGATTTGATCGTAAAGCCATCA
GATGACCACTTCTGGTTTGGGCGGCCGAGGATCGTCCTATTCCTGATCCACTTCATCCTC
TTCCAGAACGCCTTTGAGATTGCATTCTTCTTCTGGATACTGACCACATATGGATTCAAC
TCCTGCATCATGGGGCAAGTCGGTTTCATTGTGCCGAGGCTTGTTATTGGGCTCATCATC
CAGCTTCTCTGCAGCTACAGCACCCTGCCTCTGTATGCAATTGTAACACAGATGGGAAGC
TTCTACAAGAAGGAGATCTTCAATGAGCATGTGCAGCAGGGTGTTCTGGGTTGGGCTCAG
AAGGCTAAGATGAAGAAGGGATTCAAGAAGAGCAATGGCCCGGCAGAATTGACGGGTGCC
GTCAATTCAGCAGGGCCTTCTGCTAAGATTGAAATGATGAAACGACCAGCACGGGAAGGC
AACGACGCCCCCGGTGAAAGCATAGAATGATGCAGCATCAGTAGTGAGTAGCGTTGTCTA
GAACAATGGCTATGATGTCTATTTTGGTGCTGCAATGAAAGCACTTAGAATGTGCTATCA
TTATACAGGTAGATTTACTTCTTGCTGCCCTAAAACATTGCGGTCGCAAGGTCAGAAAAG
AAATCCGGTCCAAAAAGTTTATCTCTCGCAGTGACGGTGCCTAAACTGTCCTGCTTCGGC
TGCTTCTGGTGCAGTTTGATCCCGATTGGCGATAATTCTCTGATGGACCATATTTTTCTT
TGAGAACTATCTGATAGACCACTTATGCATCAGTCAACTAAAAAAAATGTTTTGGCCCAA
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_19320 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g66510.1	503	protein\|MLO domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g25190.1	494
Arabidopsis v10	AT4G02600.1	526	\| Symbols: MLO1, ATMLO1 \| Seven transmembrane MLO family protein \| chr4:1144141-1147156 FORWARD LENGTH=526