barSeed - Barley Seed Development Database

Probe CUST_10608_PI390587928

Source Contig U35_19324

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10608_PI390587928	Hv_44K_v2	TGTACTATTTGCAGTGAACTTGATTTTCAGCTGGTCAGTAAGAGATGATTGGGCAAAAAA	1714	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.729	1.478	1.134	0.841	0.397	0.391
Raw	1655.643	2181.501	1475.310	1707.964	285.444	304.292

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_37413.1	2223	5e-22	2051 - 2105	100	55 / 55	plus
Harvest35	U35_19324	1785	3e-25	1715 - 1774	100	60 / 60	plus

Contig Sequence (1785 bp)

>U35_19324 1785 Hv_44K_v2
TGCTATGGGAAAATTCAAGGAAGCCCTGAAAGATTTTCAACAGGTGAAAAGAATCTGTCC
TAATGATCCAGATGCTACAAGAAAGTTAAAAGAGTGTGAGAAAGCTGTTCAAAAAATCCG
TTTTGAAGAAGCAATTTCTGTAGGGGATACAGAAAGGCGCTCTATAGCAGATTCTCTTGA
TTATCATATAATAGAAGTTGAACCACAGTATACTGGAGCAAGAATTGATGGGGATACAAT
AACATTAGATTTCGTCAAGCAGATGCTGGAGGATTTCAAGAAGCAAAAATGTATACATAA
AAGGTATGCATTACAGATTGTGTTGCAAGCACGGGACTTGCTGCGAGCAGTGCCTTCCCT
CGTTGATGTGAACGTTCCGAACGGTTGCCACTTTACGGTCTGTGGTGATGTCCACGGCCA
GTACTTCGATCTGCTAAATATATTTGAGCTCAATGGGCTTCCCTCTGAAGACAACCCTTA
CCTCTTCAATGGAGACTTTGTGGACAGAGGGTCGTTTTCACTTGAAGTCATACTTACTCT
CTTTGCATTCAAGTGCCTCTATCCAACTGGTATGTATCTTGCAAGAGGAAACCATGAAAG
CAAGAGCATGAACAAAATATACGGTTTTGAGGGAGAAGTGAAGTCCAAGTTGAGTGATAC
GTTTGTCGAGCTGTTTGCTGAAGTATTTTGTTGCTTACCTCTGGCTCATGTAATCAACAA
GAAGGTCTTTGTAGTTCATGGGGGTCTGTTTAGTGTTGATGGAGTAAAATTATCGGACAT
TAAGGCCATTGACCGTTTCTGTGAGCCTCCTGAAGAAGGTTTGATGTGTGAAATTCTATG
GAGTGACCCTCAGCCTCAGCCTGGGAGAGGTCCAAGCAAACGAGGTGTAGGGCTTTCCTT
TGGTGGAGATGTGACAAAGAGGTTTTTAGAAGATAACAACCTGGACCTTGTTGTCCGATC
GCACGAAGTGAAGGATGAAGGGTATGAAACTATGCATGACGGAAAGCTTATTACTGTCTT
CTCAGCTCCTAACTATTGCGACCAGATGGGCAACAAAGGTGCATTTATTCGGTTCAGTGC
TCCAGATTTAAAGCCAGATATTGTTAGTTTCTCAGCAGTGTCACACCCTGATGTCAAGCC
GATGGCCTATGCAAACAATTTCCTCCGGATGTTCCAATAGCAGCAGGCTGAACCTGTCTG
GCCAATTTTGATATGCAAAACTTTTCTGTGCTCAACTCATTTCGTACCAAGTTCTAATCC
AAGTCTTGTGTTGAGCAGCAAATATTTTGCTACAACAATTTTAGATGCTGCTGTGACCCC
TCCTGCCCTTTGTTGAATTATTACTGGTTCTAGCACAGTGATTTAGGTGCCTGTAGTTGT
ACATTTGCTTTATCCTTCTGCCCTTGTCCCTGTGATTCCCTTTCTAGGACATCATTTCAG
TCGGATTCTGTTGCTCTGCTCAGCTTTCACCGTGCTGACACCCCAGGATTGATGCCTTTT
CGCTCTTGATTGCTTGTGTGGATTGTTGTAATACATTTCATACACAAAATGCTACCTGCA
GCATGCAGCGGACTATGATTATTTTGTACCGAGGGTGAGCACAGAATTGTGCAATATAGT
GTTGTGTCAATGCCACAATGCGGCCTTGTAACACTTTATTGTTTAGTTTGTTCAGCCACT
TTTTATGTTGAAAAATGTAGTGTCTGGCCAATTATGTACTATTTGCAGTGAACTTGATTT
TCAGCTGGTCAGTAAGAGATGATTGGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19324 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g11550.1	484	protein\|serine/threonine protein phosphatase 5, putative, expressed
Brachypodium v1_2	Bradi2g06390.1	484
Arabidopsis v10	AT2G42810.2	538	\| Symbols: PP5, PP5.2 \| protein phosphatase 5.2 \| chr2:17812336-17815896 REVERSE LENGTH=538