barSeed - Barley Seed Development Database

Probe CUST_10607_PI390587928

Source Contig U35_19325

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10607_PI390587928	Hv_44K_v2	CGAATCTCGTCTTCATGCTATTTAAATTAACGCCTGTGGTGAAATATACTGTTTTTGGAT	936	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.075	1.245	1.186	1.039	0.387	0.374
Raw	589.041	1106.497	901.310	1255.135	160.100	171.231

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81456.1	3594	7e-23	52 - 111	98	59 / 60	minus	ABC04846 ABC11899 ABC11930 ABC17772
JLOC1	JLOC1_54183.3	664	4e-23	561 - 620	98	59 / 60	plus
JLOC1	JLOC1_54183.2	1059	4e-23	956 - 1015	98	59 / 60	plus
JLOC1	JLOC1_54183.1	798	4e-23	695 - 754	98	59 / 60	plus
Harvest35	U35_19325	1014	3e-25	937 - 996	100	60 / 60	plus

Contig Sequence (1014 bp)

>U35_19325 1014 Hv_44K_v2
TCGAGCACTGTTGGCCTCTGGGGACGAGCGCGCCAAGATTTCGTCGGCTAGGGTTTCCTC
TCCTCTCCTCTCTCTCTACTGCGCTCGCCTCACCGGCCACCGGCAGCAGCGGGAGGGATC
CATGGCGGGGGAGGCCAAGGAGCCGCAGGCGGACGGGTCCAAGCCCAAGGTCAAGAAGCC
TAAGGCTGCGGCTGCCGTCGCCCAGGATGGGGATGGGGCCAAGGTCAAGGCCAAGAAGCC
TAAGGCCGGCAAGGAGGGGGATGGGGCCAAGGCCAAGAAGGCTGCGGCTGCGGTCGCGGC
CGCGCCGGTGGCGGCGATGACGGAGGCGGAGGTGGAGGAGCTGCCCAAGGCCATCGTGCG
GCGGCTGGTCAAGGACAAGCTGGCCCGCGTCGCGTCCGGCGGCGAGGGGGCAGAGGGTGG
GGCGGAGGTCATCGTCAACAAGGACGCCATGGCCGCCTTCGCCGAGAGCGCCCGCACCTT
CATTCACTACCTCTCTGCCACGGCCAACGACGTGTGCAAGGACGGGAAGAGGCAGACGAT
CAACGCCGAGGACGTCTTCAAGGCGCTCGACGAGATTGAGTTCCCCGAGTTTGTAGAGCC
CCTGAGGACTGCACTGGAAGAGTTCAGAAGCAAAAACGCAGCCCGGAAGCCAGCATCAGG
CAAGAAGCAAGCTGAAAAGAAGAGGAAACTGGATAAAGAGGCAGTGCCTGAAGAGGAAAA
TGGAGCGGCCGATGAAACCAACGCGGCCGAGGATTAGTTTTTCCGACCTTGTGCTAGGCT
GAATCTGAATCACAATAGTAGGCGTACTTCCTTAGCAGTACGCCCCTTGTGCTCTGTTTC
GCGGAATCTCTAGATGTAGAACTGTCGTGTACTTGATATCATGATGTATGGCTCTGTTTC
TGTTCCAAACATTGTCATCTATGCTAGCTTAAATTACGAATCTCGTCTTCATGCTATTTA
AATTAACGCCTGTGGTGAAATATACTGTTTTTGGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19325 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g39490.1	168	4e-60	protein\|histone-like transcription factor and archaeal histone, putative, expressed
Brachypodium v1_2	Bradi4g38527.1	179	4e-66
Arabidopsis v10	None