barSeed - Barley Seed Development Database

Probe CUST_10603_PI390587928

Source Contig U35_19329

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10603_PI390587928	Hv_44K_v2	GTTTGAGAAGCTCCGGTGCTTGATGCTCTTGCTGCCATCAAGTAGTGGTGTAGTAAAAAA	996	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.423	1.428	1.118	0.901	0.325	0.422
Raw	280.347	437.765	301.571	377.693	48.683	68.728

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_19329	1067	3e-25	997 - 1056	100	60 / 60	plus

Contig Sequence (1067 bp)

>U35_19329 1067 Hv_44K_v2
GCACGAGGCTGCTTATATGTTCCTGTTATTTCCATCCACTCTCCTCTTACTGAGATGGTG
GGTGTGGGATGGGTGCCTTCCAGCATTGGCAGTTCAGGTGTACCAGGCTTGGTTATTATT
CCTCTACACAAGTTTTGCTTTGCGGGAGAATGTGTTGCTTGTAAATGGAAGTGATATTCG
TCCTTGGTGGATATACCACCACTATTTAGCAATGCTAATGGCTCTTGTTAGCCTTACTTG
GGAGATAAAGGGACAGCCTGATTGCTCGAGTAAGCAGAGAGGGGTACAACTTTTCCTGCG
TTGGGCAATCATGCAAGGAATTGCAATGCATCTACAGAATAGGTACCAGCGTCAAAGATT
ACGCACCCGAATTGCTCTGGGAAAGGCTAAAAGAATGGATGTCGTCGCTGGAGAAACAGC
TGGTGTGGAAGGGCAGCTATTGCTACTATATCCTGTTCTTTTTGTATTACAGGGGTTTGA
AGGATATGTTGGAGTGTTGCTTCTTCAGACGGCGTGGCACGGGCTCACCTCTGAATGGCA
GGTCATAGTTTGTGGGATCTTGCTGGTGGTGATGGCGGTTGGCAACTTCGTCAACACGGT
GGAGACTCTGGCCCTGAAACTGAGGTTCAAAGCAAAGATGAAGAGGACGCGGCACAGGCA
GGAACCTGGCCAGGGCGGTCCGAGTCGCCTCCATCAAAATTGATAGTAATCCAGTATGGT
GCCACTCCTCCATCCATGCCTGGAAACATCAATGCTGACAAAACCATCTCTTATGTATAT
CCTTTAATCGGTACACCATTTTTTGTTCTCGTGGGTTTTTCCCCTTTTTTTCCTCTTATA
TCGGTAAATTTGGTTCCGTGGCAACCAAGCCTTACGCTCTGTTCAACGCACGTTACGGCG
ACTCGACGCGCAATAATCGCCGTTTCGAGTTGGTACAATCATTGTGTATTATTGACTGGT
CCAGCACTTTTGACAGTGGGCATGTTTGAACAAAGTGTTTGAGAAGCTCCGGTGCTTGAT
GCTCTTGCTGCCATCAAGTAGTGGTGTAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19329 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01720.1	355	5e-129	protein\|transmembrane protein 120A, putative, expressed
Brachypodium v1_2	Bradi3g00960.1	361	2e-140
Arabidopsis v10	AT1G33230.1	347	5e-99	TMPIT-like protein \| chr1:12046844-12049794 FORWARD LENGTH=347