barSeed - Barley Seed Development Database

Probe CUST_105_PI415269222

Source Contig TA46026_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_105_PI415269222	Hv_44K_v2	CCATTTCTGTGGCTGCACATCACAGGTTTGTGTAAGAAAGCTAACCATTGTGTCGCTACA	1140	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39507.1	1635	2e-24	670 - 729	100	60 / 60	plus	ABC13717
MLOC	AK364583	1216	6e-24	1158 - 1216	100	59 / 59	plus	ABC13717
JLOC1	JLOC1_25763.1	2931	8e-25	694 - 753	100	60 / 60	plus
Harvest21	ABC13717	1230	3e-25	1136 - 1195	100	60 / 60	plus	ABC13717
Harvest35	U35_6106	1230	3e-25	1136 - 1195	100	60 / 60	plus

Contig Sequence (1204 bp)

>TA46026_4513 1204 Hv_44K_v2
AGGCTTGCCGCTCCTAGCTCGTCGACAAGCACACCCACAAAGCCACTGATAACAAGCACA
TAGCAGCCCGCGCTCTCTTATAGTAGAACGTTCCGAACACCACACCAGCCCATGCAAGAC
TTCCAGTCCATCCCGGGCCTCGCCGGGCGTCTGTTCGGCGGCGCGGCGGCGGCGGACATC
CGGCGCGCGCAGGGCCCGGCGTCTCGGTGCGGCGTGTTCTCCCAGGCGGCGTCTGCGCAG
CCGGAGGCGGCCGTCAAGTGCCCGCGGTGCGAGTCCACCAACACCAAGTTCTGCTACTAC
AACAACTACAACTTGTCGCAGCCGCGCCACTTCTGCAAGAGCTGCCGCCGGTACTGGACA
AAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAGGCCAAGCGCAGC
TCGTCGGCGGCGTCCGCCCCGTCGACGCCCGCTGCCACGGACGCCAAGAGCCAGCGCCGC
GCCTCGGCGTCGTCCTCCTCCCGCTCCAACAGCGGCAGCGCGAGCCCCACGGCCACCGGG
GAGGAGACGACGACGGCCGACCCCCCTCCGCCCACGCCGTCGTCCAACTCAAACTCAAAC
ACCGTCGCCTTCGGCAACCGCAGCACCAACTACCCCTTCGCGGCAGACGTGCCGCCTCCG
GCGCCGATATTCGCAGACCAGGCCGCCGCGCTCGCGTCCCTCTTCGCGCCGCCTCCTCCC
CCGCCTCTCCCGGTGTTCAGCTTCTCGGCGGAGCCGAAGATGGAGGAGGCAATCGGCTCA
CTGCTGCTCCCGGGGCAGGCGCCGGCGCAAGAGCCAGAGGAACCCGCCTGCGCCTCCACC
GTCGCCGACATGGCGCCGTTCATGTCCCTGGACGCGGGGATCTTCGAGCTCGGCGACGCG
TCGCCGGCCGATTATTGGAATGGCGGGAGCTGCTGGACGGACGTCCAGGACCCGTCCGTC
TACCTACCCTAGTTTGGTTTAGTTATTACTACTCCGTATTACTCATGGCGATCTCTTTAA
TTAAGCTGTGATTAAATCAATGCTTCTTAACGACGACCAACAGCTAGCTGGTAAGTACTA
TAGTACATGTAATGCTACGTACGTACTGCCTGCACTTGTACCTCTTAATTTGTTTCCGTC
CCATTTCTGTGGCTGCACATCACAGGTTTGTGTAAGAAAGCTAACCATTGTGTCGCTACA
ACCG

Homology of Contig TA46026_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None