barSeed - Barley Seed Development Database

Probe CUST_105_PI390587928

Source Contig U35_36893

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_105_PI390587928	Hv_44K_v2	ATGGCACCAGAGCTGGCGTTCTCCACCAGAAACAGCATCAAGACCGACGTGTACAGCTAC	66	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.347	0.591	1.043	2.481	1.440	1.296
Raw	3.802	11.988	20.863	70.291	16.400	16.082

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62341.1	3845	2e-24	605 - 664	100	60 / 60	minus	ABC44303
MLOC	MLOC_62341.4	3737	2e-24	575 - 634	100	60 / 60	minus	ABC44303
MLOC	MLOC_62341.3	3593	7e-23	585 - 645	98	60 / 61	minus	ABC44303
JLOC1	JLOC1_40797.2	3681	8e-25	2984 - 3043	100	60 / 60	plus
JLOC1	JLOC1_40797.1	3928	8e-25	3231 - 3290	100	60 / 60	plus
Harvest21	ABC32353	396	3e-25	67 - 126	100	60 / 60	plus
Harvest35	U35_36893	396	3e-25	67 - 126	100	60 / 60	plus

Contig Sequence (396 bp)

>U35_36893 396 Hv_44K_v2
GCGAAGATCATGGACCAGTGCTCTGCTGCTCCACAGACCACCGGGGTCGTCGGCACCACC
GGATATATGGCACCAGAGCTGGCGTTCTCCACCAGAAACAGCATCAAGACCGACGTGTAC
AGCTACGGCGTCGTCCTGCTGGAGCTGATCACGGGCAAGACGGCGGTGGACCCCTCGTTC
CCGGAGAGCATGGACATCGTCGGCTGGGTGCCCCACGCCCTGAACGGCGCGGAGCAGATC
GGGCCCGTCTGCGATCCGGCGCTCCTGGACGAAGTGTTCAGCACGGTCGAGATGGAGGAG
GTGCGCAAGGTCCTGCGCCTGGCCCTCAGGTGCACGGCGAATGAGCCGAGCCGGCGACCG
TCCATGGTCGACGTCGTGAAGGAGCTGACCGACGCG

Homology of Contig U35_36893 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g34640.1	1113	6e-57	protein\|receptor-like protein kinase precursor, putative, expressed
Brachypodium v1_2	Bradi3g34470.1	1118	2e-64
Arabidopsis v10	None