barSeed - Barley Seed Development Database

Probe CUST_10597_PI390587928

Source Contig U35_56

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10597_PI390587928	Hv_44K_v2	GCTTTGCTCTGATGATGATCTAATCTAAGCCTGCGGAACGCGCGTGTATATATATATGCT	734	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.606	5.864	1.642	0.746	0.164	0.263
Raw	338.005	441.862	100.420	76.709	4.873	9.658

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253042.1	810	7e-23	733 - 792	98	59 / 60	plus	ABC02141 ABC02142 ABC26778
Harvest21	ABC26778	469	1e-23	381 - 440	98	59 / 60	plus	ABC26778
Harvest21	ABC02142	640	5e-23	18 - 73	100	56 / 56	minus	ABC02142
Harvest21	ABC02137	875	6e-22	722 - 781	97	58 / 60	plus
Harvest35	U35_440	843	3e-25	735 - 794	100	60 / 60	plus
Harvest35	U35_56	794	3e-25	735 - 794	100	60 / 60	plus

Contig Sequence (794 bp)

>U35_56 794 Hv_44K_v2
GCTCTTTTCCAGCCACTTAACACTTGGCTAGGCTAGCTCTCCTCCTCTGCAGTACGTAGC
AAGCAGCCATGGCCGCCCTCTCCTCTGCAGCCGTGTCCGTCCCTTCCTTCGCCGCCGCCA
CCCCCATGCGCAGCAGCAGGATGGTTGTGCGCGCTTCCCTGGGCAAGAAGGCCGCCAGCG
CGGCCGTGGCCATGGCCGCCGGCGCCATGCTGCTGGGCGGGTCCGCGATGGCACAGGACG
TGCTCCTGGGTGCCAACGGCGGCGTGCTGGTGTTCGAGCCCAACGACTTCAGCGTCAAGG
CCGGCGAGACCATCACCTTCAAGAACAACGCCGGGTACCCGCACAACGTGGTGTTCGACG
AGGACGCCGTGCCCTCCGGCGTCGACGTCTCCAAGATCTCCCAGGAGGAGTACCTCAACG
CCCCCGGCGAGACCTTCTCCGTCACCCTCACCGTCCCCGGCACCTACGGCTTCTACTGCG
AGCCCCACGCCGGGGCCGGCATGGTCGGAAAGGTCACCGTCAACTAATGAAGCTACCAAT
TTGGGTCGATTGATCGCTCAAATTGGACGTGTCGTCATGCATGCATCATATTGATTAATT
GTACGCTATATGTATGTATATGTTTTCTACTCTACTCTACTCTATAAGATCGATGAGGCT
CTTCGTGATAAAAAAAAAAAAAAAAAAAAATCTTCTTAAGTACGTACGTACTAGTCCTTC
TTCTTAATCAATTAGCTTTGCTCTGATGATGATCTAATCTAAGCCTGCGGAACGCGCGTG
TATATATATATGCT

Homology of Contig U35_56 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01210.1	155	5e-62	protein\|plastocyanin, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g52460.1	157	4e-63
Arabidopsis v10	None