barSeed - Barley Seed Development Database

Probe CUST_10575_PI390587928

Source Contig U35_19335

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10575_PI390587928	Hv_44K_v2	GCAACGCATCTTGTCAGTGGCCCAAACTACATAGTTGAAAACCATTTCTGGGCCAAAAAA	1230	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.443	1.609	1.168	0.836	0.416	0.426
Raw	2229.827	3974.513	2484.123	2814.366	482.848	541.565

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC10802	816	3e-25	12 - 71	100	60 / 60	minus	ABC10802
Harvest35	U35_19335	1301	3e-25	1231 - 1290	100	60 / 60	plus

Contig Sequence (1301 bp)

>U35_19335 1301 Hv_44K_v2
GGGAAAATTTCAAGGATGTTGTCAATTGGCTTAGGCAAAATAAAGCAGGCACAGCAGCTG
TTTCATCCCCAAGTCCAGCCAATGATGAGAAGACTACTTCGCCGGCAACTGTCAATAGCA
AGTTTATGGTACAGCCAGGATCAGATAATGGACAGAAGAGTCTAACTACAGGAGCCAGCT
CCCTGTCTTTTCAGAACTCAAGCTCAACGAATATGTTCTCACTCTCTTCTCAGAAGAAAA
CGGCAGCTTTTGGCGGCATATTTGATAACAAGGACACGCCTGGCGACAGCAGCAAATCGA
CTTTCCAGTTTGGTGGAAATAATGGCTTTTCAACACCAACTAACACGCCTGGCGATAGCA
GCAAATCAACTTTCCTGTTTGGTGGAAATAATGGCTTTTCAACACCAACTACTCCGTCCA
TTTTTTCTACCCCTGGTTCCAGTTTTAACATGCCAACCCCAACACTGTTTTCAATGAACC
AGCAACCAATTTTCACTGGATCAGGAGACAAGAAAGCTCCTGAAGCTTCAGCTGATGCGG
ATGAAGATGCTGAAGCTGAGCAACCAAGCAGCCCTTCTGTAAAAAAAGCAGAAGAGAAAG
GAATAGTCGTTGTTTATGAAGCCAAATGCAAGGTGTATGTGAAGCATGATGATGCTACCA
AGGGTTGGAAAGACATTGGTGTCGGTCAGCTCTCTATCAGATGTAAAGAGGGTGCAGAGA
AAGCTTCAAAAGAGTCCACCCCAACAGTTGTTATCAGAAATGATGTTGGCAAAATTCTTC
TGAATGCTATGATCTACAAGGGGATAAAAATGAGTGTTCAAAAGAACACAGTTGCTTCAA
TATTTCACACTTCGGATGCGCAGTCTGAATCAGAGGGTGGCAACGTTGTAGCTCGAACAT
ACTTACTCCGACTGAAAAACGAAGAGGCGGCTACAAACCTGTCAGCGGTCATCAAAGAGA
ACGCACCGCTGGACTGATCCTGCATGGCCTGTATTAATTACTGTCTCGAAGGTATGCTTG
TGGCAATAGTGGTAATGTTTAGAGGGGCTCGATAACTTGCTGCGATGGGCGAAAGGATGC
CTTGCAGAGTTTTTGTCCCCAAGTTCACCCAGATGAATTTTTGTTGTCTAGTATGTTTAG
CTGGTCGTGTTGTATCACCTGTTCTTTATTTATTGACAGTGTGTTGTATCACCTGTTGGC
ACCAGTACGGTTATGCCTTGTTAATGCGAGGCAACGCATCTTGTCAGTGGCCCAAACTAC
ATAGTTGAAAACCATTTCTGGGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19335 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g46480.2	361	9e-108	protein\|ranBP1 domain containing protein, expressed
Brachypodium v1_2	Bradi5g18857.1	358	3e-120
Arabidopsis v10	None