barSeed - Barley Seed Development Database

Probe CUST_10574_PI390587928

Source Contig U35_19336

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10574_PI390587928	Hv_44K_v2	GGTGGTACTACTACGTTGTTGCATATCATCTGATAATGTCCAATTAATGTTGCAATGCCA	1586	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67201.4	2354	6e-24	2296 - 2354	100	59 / 59	plus	ABC12060
MLOC	MLOC_67201.3	1895	6e-24	2 - 60	100	59 / 59	minus	ABC12060
MLOC	MLOC_67201.2	2342	6e-24	6 - 64	100	59 / 59	minus	ABC12060
MLOC	MLOC_67201.1	2185	6e-24	40 - 98	100	59 / 59	minus	ABC12060
JLOC1	JLOC1_44340.2	2168	3e-24	2081 - 2139	100	59 / 59	plus
JLOC1	JLOC1_44340.1	2165	3e-24	2078 - 2136	100	59 / 59	plus
Harvest21	ABC12060	1662	3e-25	1587 - 1646	100	60 / 60	plus	ABC12060
Harvest35	U35_19336	1662	3e-25	1587 - 1646	100	60 / 60	plus

Contig Sequence (1662 bp)

>U35_19336 1662 Hv_44K_v2
CAGATCAGGCGGAGCGTCACCTCGCTCTACCCGTCCGCCTACTTTGGCTCCTCCACATTG
GGGTGGGGGCCTTTCCAGCTGGGCTACTCCGGGAACGCGGACCTGGAGCCCGGGCGGTGC
CGCCGGACGGACGGCAAGAAGTGGCGGTGCTCCAGGGACGCCGTCGCCGACCAGAAGTAC
TGCGAGCGGCATATGAACCGGGGACGCCATCGTTCAAGAAAGCATGTGGAAGGCCAGCCT
GGCCATGCCGCGAAAGCGATGCCTGCCACGGTGGCGGCTGCTGCGCAGCCCGGTGCTCTC
GCCGCAGGTGGCTGCGGCGGAGCTACTGCTGGCGCCGCCATCGGCCACGAGCAGCAGCCG
ATGAAGAGCTACGCCGCCAACGCCATTGATCCTTGTTCACTGCAATACAACAGCAGGGAA
ATGGTAAGCAAGCAGCAACAGGAGTGTGAACAAGTGCAGGACTCGGATAGCCTCTCGATG
CTGACTTCCATGAGCGCGAGGAACACAGCAGGCAGCATGTTCCCGTTCTCAAAGGAGCAT
CACAATCACAATCACAATCACAATCACAATCCCTTCGAGGTGACGAGCTCGAGGCCGGAT
TACGGGCTGGTCTCATCCGACTCGCTGATGACGAGCTCCCCTCACAGCTCCTTGGAGAAC
GTCAACCTGCTCACCTCGCAGCGAGCGCTCTCGAACGAGCAGCAGAGCTCGCTCTCCCTG
CAGCACTTCGCGGACTGGCCGAGGACGCCGTCGCAGCAGGGGCATGGCGGAGCGCTCTCA
TGGCCGGACGCCGAGGACATGCAGCAGGCTCATCAGCGGACCCAGCTCTCGATATCCGCT
CCAATGGCGTCGTCCGACCTGTCGTCGGCCTCCACGTCCCCGATCCACGAGAAGCTCATG
CTGTCGCCCCTCAAGCTGAGCCGCGAGTACAGCCCCATCGGCCTCAGCATCGCGGCCACG
GCGGCGGCGAAGGAGGACGAGGGGGAGGCGAACTGGATGCCGCTGTTCCGCGACTCGGCC
ATGGGCGGGCCGCTGGGGGAGGCTCTGAACAAGAACAATGGCGGCAACATGGAGGCCAAG
AACTACCTGTCGGCGTCGCTGAACCTCATGACGGACGCCTGGGACTCGAGCCCGCTGGAG
TCGTCCCCCGTGGGGGTGCTGCAGAGGACCGCCTTCGGGTCGGTGTCCAGCAGCACCGGC
AGCAGCCCCAGGCAGGAATACCACGGCGTGTATGACGGTGTCCCGCGGGATGATCTCGGC
TCCATCGTCGTGAATCACCCCAGCATCCGGCTGATGTGAGCTGCTGCTGCTTCTGAGTTC
TGACCATGGGAGCTGGAAGAAGGAGGCTGGCCGGCCGGCAACGAAGTCCGGCAATGAACG
AACTTGGGCAAGCCTTCTTCACGGACCTTGTTACATATCCAACATCGTATCCAGAAGCAT
TTTACGTTGTGGCTTGTCATTTGGGACTAATCTGTTGTTGTCTTCTCTGCTTCTGGATGT
TGGGGTTTTCTATTCCTTTTTCGATGTAACCTTAGAATTCGCTGGGTATTTGACGTTGTA
TGTGTTGTGTGTCTGTGGATGGATTTGGTGGTACTACTACGTTGTTGCATATCATCTGAT
AATGTCCAATTAATGTTGCAATGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19336 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51970.1	457	1e-150	protein\|growth-regulating factor, putative, expressed
Brachypodium v1_2	Bradi1g09900.1	449	2e-161
Arabidopsis v10	None