- Probe CUST_10567_PI390587928
- Source Contig U35_61
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10567_PI390587928 | Hv_44K_v2 | GTGGAGCAATGCATGCTTGTTGGATGTGTACTTGTACTCTGGTGTAACCGATGTAAAAAA | 145 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.406 | 5.308 | 1.427 | 0.727 | 0.255 | 0.368 |
| Raw | 3565.547 | 4972.033 | 1078.516 | 899.561 | 103.883 | 170.984 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60073.1 | 740 | 3e-22 | 1 - 56 | 100 | 56 / 56 | minus | ABC01519 ABC01529 |
| MLOC | MLOC_60073.2 | 1165 | 3e-22 | 1 - 56 | 100 | 56 / 56 | minus | ABC01519 ABC01529 |
| JLOC1 | JLOC1_39142.1 | 1337 | 8e-25 | 1107 - 1166 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC35104 | 423 | 3e-25 | 32 - 91 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC01529 | 1038 | 3e-25 | 937 - 996 | 100 | 60 / 60 | plus | ABC01529 |
| Harvest21 | ABC01519 | 245 | 3e-25 | 146 - 205 | 100 | 60 / 60 | plus | ABC01519 |
| Harvest35 | U35_39050 | 423 | 3e-25 | 32 - 91 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_153 | 1051 | 3e-25 | 948 - 1007 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_61 | 245 | 3e-25 | 146 - 205 | 100 | 60 / 60 | plus |
Contig Sequence (245 bp)
>U35_61 245 Hv_44K_v2 GCACGAGGAAGGCAACAGCTGAAGGTGGAGAGAAGAAAAAGAGGAAGAGTCAGAAACAAG CAGTTGAGGCTGAAAAAGAGGATGATGATGAAGAAGATCGCTGGTGGAATTAGATTATTT TTCCCGTGGATGATGGTATGTAATTGTGGAGCAATGCATGCTTGTTGGATGTGTACTTGT ACTCTGGTGTAACCGATGTAAAAAAAAATGAATACCCTTTTGAAGCTTAAAAAAAAAAAA AAAAA
Homology of Contig U35_61 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |