- Probe CUST_10565_PI390587928
- Source Contig U35_45603
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10565_PI390587928 | Hv_44K_v2 | ACGTGCTCCATCTGATGTGCCTTGGTTGATTACTTGATTGTGCTCGTCTGGAATGTCAAA | 14 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.235 | 1.368 | 1.074 | 0.715 | 0.281 | 0.307 |
| Raw | 193.571 | 325.044 | 230.837 | 237.170 | 34.684 | 39.674 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56339.2 | 1855 | 6e-24 | 143 - 201 | 100 | 59 / 59 | minus | ABC24571 ABC44686 |
| MLOC | MLOC_56339.1 | 1104 | 6e-24 | 143 - 201 | 100 | 59 / 59 | minus | ABC24571 ABC44686 |
| JLOC1 | JLOC1_36429.1 | 2149 | 3e-24 | 2085 - 2143 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC44686 | 450 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | ABC44686 |
| Harvest35 | U35_45603 | 450 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (450 bp)
>U35_45603 450 Hv_44K_v2 TTTTTTTTTTTTTTTTTGACATTCCAGACGAGCACAATCAAGTAATCAACCAAGGCACAT CAGATGGAGCACGTTCATGGAATCATATGTTAAAAGGAAATAGTAAAACATGAAATAGCC CACGAATATATCTCTGTCTGCCAGCAACGAGCAACACAATCAGAAGATATTGCAGGTTTC GACAACCCAAGCTTAAGAATCAAAACAGTGCCTTGCAGGTAGACACCGCAACGGAGCACA AACCACGTCTTTTTTTGCTCATATGTAAATTATCACTTATAGGCTTCGTCTGATGATGAA CTCAAAAGGGCCCCTGGTACAGAAATCCAAAACCTCTCTCCAAGTTTCAGTTAACACGAA CCTCCTCAGGAGAGAACTAGTCTCGACTTTTTTTTTTTTTTTTTTTTTCATAACAATGCA TTGTTAAAGCACCAAAATTGGATAACAAAG
Homology of Contig U35_45603 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |