barSeed - Barley Seed Development Database

Probe CUST_10560_PI390587928

Source Contig U35_65

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10560_PI390587928	Hv_44K_v2	CATAATCATGATAGTTTGTGATCAGATGTGCAGCTCGCAATTCCATATACCAAGAAAAAA	1112	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364023	1790	3e-22	1712 - 1767	100	56 / 56	plus	ABC02779 ABC02780 ABC44343
MLOC	MLOC_59925.1	1808	3e-22	1417 - 1472	100	56 / 56	plus	ABC02779 ABC02780 ABC44343
JLOC1	JLOC1_39039.1	1475	1e-22	1285 - 1340	100	56 / 56	plus
Harvest21	ABC02779	1182	3e-25	1113 - 1172	100	60 / 60	plus	ABC02779
Harvest35	U35_65	1182	3e-25	1113 - 1172	100	60 / 60	plus

Contig Sequence (1182 bp)

>U35_65 1182 Hv_44K_v2
AAAAGCCGCTGCTGGAACCTACAAAAGCCTGGTATTTTACCTTGAAGCCTGTGAAGCCGG
GAGTGTCTTTGAGGGGCTTCTGCCGAACGACATTGGTGTCTACGCAACCACCGCATCAAA
CGCATAGGAGAGCAGTTGGGGAGCGTATTGCCCTGGCGAGTATTTTTTTCCTCCGCCGGA
ATATGACACTTGCTTGGGCGAGGGGTGCAGGGTTTCTTGCCCCCCCGACAGTGATGTCCA
CAACCTGAGAACCGAATCTCTCAAGGAGCAATATAACCTGGTGAAAAAGAGAACGGCGGC
TCAGGACTCATACAGCTACGGTTCCCATGTGATGCAATATGGTTCTTTGGACCTGAATGC
TCAACATCTCTTCTTGTACATCGGGTCAAATCCTGCTAACGACAACGCTACTTTTGTTGA
AGAGAACTCACTGCCATCCTTCTCAAGAGCTGTTAATCAGAGGGACGCTGATCTTGTTTA
TTTTTGGCACAAGTACCGGAAATTGGCTGAGAGCTCCCCTGAGAAGAACAATGCTCGGAA
GCAATTGCTCGAGATGATGGGTCACAGATCTCATGTTGACAATAGCGTGGAATTGATTGG
AAACCTTCTGTTTGGTTCTGCCGATGGTCCAATGGTTCTCAAGTCTGTTCGCCCAGCTGG
TGAGCCTCTTGTTGATGACTGGAATTGTCTAAAGTCTACGGTGCATACTTTTGAATCACA
ATGTGGCTCGTTGGCGCAGTATGGGATGAAGCACATGCGGTCCTTTGCAAACATCTGCAA
TGCCGGCATCCTTCCTGAAACGATGGTAAAGGTCGCTGCTCAGGCGTGCACGAGCATCCC
AACCAACCCATGGAGTGGCACACACAAAGGTTTTAGTGCTTAAACCATAGGTGAAGCAAC
CTAGTCACAATTTCAGCTATTGCACCATACACCAAAGTTTCTTCCTATTCACATAGGGCT
AGTATTACTCCGTAGTGCTTGAACGAACATTAATTAGATGGAGAAGAATTATGCCGTTAT
TCAGCTATTCCAATACACCAAATTACCTTCGTTGTGCCAGCTTATAATGTACATATACTA
TAGTAGAAAGGTGATTTCATGTGATTTCTGTACATAATCATGATAGTTTGTGATCAGATG
TGCAGCTCGCAATTCCATATACCAAGAAAAAAAAAAAAAAAA

Homology of Contig U35_65 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g37910.2	411	2e-174	protein\|vacuolar-processing enzyme precursor, putative, expressed
Brachypodium v1_2	Bradi2g41270.1	489	0.0
Arabidopsis v10	AT4G32940.1	494	2e-132	\| Symbols: GAMMA-VPE, GAMMAVPE \| gamma vacuolar processing enzyme \| chr4:15900557-15903161 REVERSE LENGTH=494