barSeed - Barley Seed Development Database

Probe CUST_10557_PI390587928

Source Contig U35_67

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10557_PI390587928	Hv_44K_v2	ATGCACCATCATCTGTGCGATTCCATCCAATACTAGATAAAACTTGGGAATAAATACAAA	1059	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.014	0.011	0.210	2.292	5.134	6.899
Raw	16.238	20.854	450.880	6872.417	5677.823	8302.687

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251750.1	1148	2e-24	1074 - 1133	100	60 / 60	plus	ABC00209 ABC28950 ABC32362
MLOC	MLOC_66711.1	2132	2e-24	894 - 953	100	60 / 60	minus	ABC00209 ABC28950 ABC32362
JLOC1	JLOC1_43995.1	1222	8e-25	25 - 84	100	60 / 60	minus
Harvest21	ABC00804	1131	3e-25	1031 - 1090	100	60 / 60	plus
Harvest21	ABC00209	1153	3e-25	1060 - 1119	100	60 / 60	plus	ABC00209
Harvest21	ABC28950	261	1e-23	170 - 226	100	57 / 57	plus	ABC28950
Harvest21	ABC00533	897	1e-23	806 - 865	98	59 / 60	plus
Harvest35	U35_67	1153	3e-25	1060 - 1119	100	60 / 60	plus
Harvest35	U35_199	1131	1e-23	1031 - 1090	98	59 / 60	plus

Contig Sequence (1153 bp)

>U35_67 1153 Hv_44K_v2
GCGAAGATCTGCAGCATAAACATCCAAACGAAACAATCAAGAGTAACCACAAATCAACCA
TGAAGATCTTCCTATTGTTTTCCCTCCTTGGTGTGGCAACGGCCATCACTACCACCACCA
TGCAGTTCAACCCAAGCGGCCTTGAACTAGAAAGGCCACAACAATTATTTCCACAATGGC
AACCACTTCCCCAACAACCACCATTTCTGCAGCAAGAGCCAGAACAACCATATCCACAAC
AACAACCACTTCCCCAACAACAACCATTTCCGCAGCAACCACAACTTCCCCATCAACATC
AATTTCCACAGCAGCTGCCGCAACAACAATTTCCGCAGCAGATGCCACTCCAGCCGCAAC
AACAATTTCCGCAGCAGATGCCACTCCAGCCGCAACAACAACCACAATTCCCGCAACAAA
AACCATTTGGCCAATATCAACAACCATTAACACAACAACCATATCCGCAACAGCAACCAT
TGGCACAACAACAACCTTCTATAGAGGAACAACATCAATTGAACTTGTGCAAGGAGTTCC
TCCTACAGCAGTGCACCCTGGACGAGAAGGTACCATTACTCCAGTCAGTGATCTCGTTCC
TCCGACCACATATCTCGCAACAAAACAGTTGCCAATTGAAGCGACAACAATGTTGTCAAC
AACTAGCAAATATCAATGAGCAATCCCGATGCCCAGCCATCCAAACCATTGTGCATGCCA
TCGTCATGCAACAACAAGTACAACAACAGGTGGGTCATGGTTTTGTCCAATCTCAACTGC
AACAGTTGGGCCAGGGAATGCCCATCCAGCTTCAACAACAGCCGGGCCAGGCCTTTGTCC
TACCTCAACAACAAGCCCAGTTCAAGGTGGTTGGGTCATTGGTGATTCAGACACTTCCTA
TGTTATGCAATGTGCATGTCCCACCTTATTGCTCACCATTTGGTAGCATGGCTACCGGCA
GTGGTGGCCAATGAAATGACAAGAGTTGTAATACTAGATCGATGGACCTTCATTGTTACT
CGATTGGAGTATCGATGTAGCAATGAAAAATAAAGTGTCATGCACCATCATCTGTGCGAT
TCCATCCAATACTAGATAAAACTTGGGAATAAATACAAACAAATAGTTGTTTGCAAAAAA
AAAAAAAAAAAAA

Homology of Contig U35_67 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None