barSeed - Barley Seed Development Database

Probe CUST_10552_PI390587928

Source Contig U35_69

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10552_PI390587928	Hv_44K_v2	GATGATGAATGAAGTGTCGTGACTGGAAAATGGCTTTTCCAATCATGGGAATAAAAGAAA	1149	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.024	0.016	0.229	2.595	8.061	11.080
Raw	30.882	29.149	424.539	6353.533	7770.147	11537.867

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
Harvest21	ABC00764	1235	3e-25	1144 - 1203	100	60 / 60	plus
Harvest21	ABC00219	1247	3e-25	1150 - 1209	100	60 / 60	plus
Harvest21	ABC00810	837	1e-23	746 - 806	98	60 / 61	plus
Harvest35	U35_69	1247	3e-25	1150 - 1209	100	60 / 60	plus

Contig Sequence (1247 bp)

>U35_69 1247 Hv_44K_v2
GCATCCTTTACATTACTAGAGCACAAGCACAAGAACTAAGAAAGGTTTATTTAACAGAAA
TCCACCATGAAGATCTTAATCATCCTTATAATCCTTGCCATGGCGACTTCCTTTGCCACC
TCTGAGATGCAAGTCAACCCTAGTGTCCAAGTACAACCGACACAACAACAAACACATCCC
GAGTCTCAGCAACCATTCATCCATCATTCACAACAACAATTTCCCCAGCCACAACAATCA
TTCCCTCAGCAACCACAACAGCCATTTCCTCAATCCCAACAGCCATGCCTCCAGCAACCA
CAACACCAATTTCCCCAACCGTCACAACCATTCCCCCAGCAACCACTACAATCGTTTCCC
CGCCCCTTCCTACCATTCCCCGAGCAACCACTCCCTCAACCACCACAAGAATCATTCCCC
CAACCCCCACAATCATACCCTCAACCACCATTACAACCTTTTCCTCAGCCACCACAAGAA
TCATTCCCCCAGCCCCCACAATCATACCCTCAGCCACTGTTACAACCTTTTCCTCAGCCC
CCGCAACAACAATATCCTGAGCAACCCCAACAACCATTCCCTCGCCCCCCTCAGGAACAA
TTCCCTAATCAACCACAACAACCATTTCCTTGGCAACAACCATCTATTCAACTATATCTC
CAACAACATTTGAATCCATGCAAGGAGTTTCTCTTGCAACAGTGCAGGCCTGTGTCATTG
GTATCGTACCTCTGGTCAAAGATCGTGCAGCAGAGCAATTGTCAGGTGATGCAGGAACAG
TGTTGCCTGCAATTGGCACAGATCCCTGAACAATACAAATGCACAACAATTGATAGCATT
GTGCATGCCATCTTCCTGCAGCAAGGCCAAAGACAAGGCGTGCAGATCGTGCAACAACAA
CCTCAGCCGCAAGAGGTGGGTCAATGTGTGCTCGTCCAGGGTCGGGACGTCGTCCAACCG
CAACAACTAGCTCAAATGGAAGCAATCAGATCGTTGGTGTTGCAATCCGTTCCGGCCATG
TGCAACTTTAATGTCCCACCTAACTGCTCCACTATGAGAGCACCATTTTTCAGCTTAGTC
AACGCTGGAATGCTATAATAATTAATAGATGGATCATCATTCGTTAGCCGATATACCAAT
AAATGTAATGATGATGAATGAAGTGTCGTGACTGGAAAATGGCTTTTCCAATCATGGGAA
TAAAAGAAAAATAAAATTCTCATGAATAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_69 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None