barSeed - Barley Seed Development Database

Probe CUST_10550_PI390587928

Source Contig U35_21652

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10550_PI390587928	Hv_44K_v2	GTTCTTTTGTGTCACATTTGTACCCAAAGATATATGTTTGTGTAAGCAGGTAATGCTTGT	346	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369112	1291	2e-24	1232 - 1291	100	60 / 60	plus	ABC05887 ABC05888 ABC15936
MLOC	MLOC_22877.1	221	2e-24	104 - 163	100	60 / 60	plus	ABC05887
JLOC1	JLOC1_15836.1	224	8e-25	107 - 166	100	60 / 60	plus
Harvest21	ABC05887	556	3e-25	68 - 127	100	60 / 60	minus	ABC05887
Harvest35	U35_21652	473	3e-25	347 - 406	100	60 / 60	plus

Contig Sequence (473 bp)

>U35_21652 473 Hv_44K_v2
GCCGGCTTGATAGAGAACACGCCCGCCCCGGCCATCGCCATAGACTACTGGCGCCTTCCA
GCCGACGCCAGGCTCAAGGACGTGGTCACCGCCGTGCGCGCCGACGAGGCGCATCACCGC
GACGCCAACCACTACGCATCCGACATCCATTACCAGGGAATGACGCTGAATCAGACGCCT
GCGCCGCTCGGGTACCACTAATCAATGGTTCGATCGATATGCTTTCTCGGTGGTTCAACG
GACCATAGATCGATGCCTGCTATGTCCACCGCTGTTACGTACTACCACTGTCGCCGATGT
TTGTCCTGTTAATTTGGGATCCAAGTATGTCGAACTATGTCTATGAGTTCTTTTGTGTCA
CATTTGTACCCAAAGATATATGTTTGTGTAAGCAGGTAATGCTTGTAAATATGATTTGAT
TACTCTCTTAAAAAATATATTTAATATTATTACTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21652 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None