barSeed - Barley Seed Development Database

Probe CUST_10549_PI390587928

Source Contig U35_21653

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10549_PI390587928	Hv_44K_v2	AACTATGCAACTGGACAGGGGTACAACATGCAATACCCACAGATGTTTCCCTTCTCAACT	791	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369367	2367	2e-24	900 - 959	100	60 / 60	plus	ABC07402
JLOC1	JLOC1_44941.2	2609	8e-25	820 - 879	100	60 / 60	plus
Harvest21	ABC15592	1102	3e-25	792 - 851	100	60 / 60	plus
Harvest35	U35_21653	1102	3e-25	792 - 851	100	60 / 60	plus

Contig Sequence (1102 bp)

>U35_21653 1102 Hv_44K_v2
TCTCCCCACCCCTTTCTCCTCTAACCTTTAGCTTTTCCTCACTCACTCCCTCTCTCTCCC
ACCGTTCCTCTAACAAGACCCGCCGCTCGTAGCGTCCTAGCCCAATTCAGATCCTTAGCT
GCAGCTGCTTTCAGTCGTTTCCTCTTCCTCGAGGCGGCGGCGTCGCCATGAGCCCGCCGA
GCGTGATGGGGCAGTTCGGGGACACGACCTACACCAAGGTGTTCGTGGGGGGGCTGGCGT
GGGAGACGCAGAAGGAGACCATGAGGAAGTACTTCGAGCAGTTTGGGGAGATCCTCGAGG
CCGTCGTCATCACCGACAAGAACACCGGCAGATCCAAGGGCTACGGATTTGTTACCTTCC
GGGACCCGGATGCGGCGATGAGGTCTTGCGTCGATCCCGCGCCGGTCATCGACGGGAGGA
GAGCCAACTGCAACCTGGCTTCCCTTGGTGTTCAGAGATCCAGGCCTCCAACCCCACAGC
ACGGGGGTGCTAGGAGCTTTCGAGTGATGAAGTCCTTTGGGCAGCAGCAGGCTGCGGGGA
TCCAAGGTGCGCTGGGCGCAGCTTTTCCTTCGCAGGCCACCTTCCCTCATTATGCCATCC
CACAGGGCCTCCCTTACCACGTCTATGGGTACTCTCCTTATTCTCCAGACTACGGTTTTC
CCGCAAACTACTACAACATCTATGGAGGAAACCAGTACCCATTTTACGGAGGAGCAGGAA
CTGGCATGGTGACTGGAACCAGTCCCTTCTATCCATATTTCCAGTTTGGGCAATCCGGAA
GCACTACGCCCAACTATGCAACTGGACAGGGGTACAACATGCAATACCCACAGATGTTTC
CCTTCTCAACTGTGGCTTCTACAGCCGCTGCTGTAACAGGCTTTGCACAGCAATATGGAG
GGCCATTGTCACTTGCAGCGAGTCCTCAAGCCCAAGCAGTGTGTATCCCCATTAAACAGG
CATGACTATGGCTCTCACAGCACCAACCTTGCCAAGTCCAACTCAGGCTGCTCATCCTTA
CCGGCTCGTCCCCTCTCACTTTGCTGTGTCTGCTGCTCCAGAGCAATCCTTGGCCTAACC
ATGGTCTCCATTCTCATCATCG

Homology of Contig U35_21653 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65550.2	270	2e-161	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi2g56676.1	263	2e-166
Arabidopsis v10	AT1G33470.1	245	1e-71	RNA-binding (RRM/RBD/RNP motifs) family protein \| chr1:12144632-12146040 FORWARD LENGTH=245