barSeed - Barley Seed Development Database

Probe CUST_10548_PI390587928

Source Contig U35_21654

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10548_PI390587928	Hv_44K_v2	TCAAGTTGGAGTCTTCAGGAAAACCTTATCCCTCGTGGACCGCTGATTGTTTGAGGTATA	784	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.829	0.989	2.030	2.331	0.775	0.819
Raw	41.187	76.458	136.794	264.386	30.584	34.249

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79979.5	659	2e-24	281 - 340	100	60 / 60	plus	ABC18943
MLOC	MLOC_79979.3	1836	2e-24	1165 - 1224	100	60 / 60	plus	ABC18943
MLOC	MLOC_79979.4	1949	2e-24	1278 - 1337	100	60 / 60	plus	ABC18943
MLOC	MLOC_79979.2	1650	2e-24	589 - 648	100	60 / 60	plus	ABC18943 ABC38688
MLOC	MLOC_79979.1	1637	2e-24	702 - 761	100	60 / 60	plus	ABC18943
JLOC1	JLOC1_53255.2	1862	8e-25	571 - 630	100	60 / 60	plus
JLOC1	JLOC1_53255.1	1677	8e-25	589 - 648	100	60 / 60	plus
Harvest21	ABC15441	1041	3e-25	785 - 844	100	60 / 60	plus
Harvest35	U35_21654	1041	3e-25	785 - 844	100	60 / 60	plus

Contig Sequence (1041 bp)

>U35_21654 1041 Hv_44K_v2
CAGCCACTTCGTTCCCGAACCAAACACACCCTTGGTGGCTTCGTGCTACCGAATCGAACC
CGAGGAGACCCCCGTCCCCCGTCCCGTCCCGTCCCAAGCGCCGGTAAACTGCGTCACGCC
CCCAATCTCCATTCGCCACAAACCCTAACCGCCCCCCTGTGTCGCGCCGCCGGCCGCCCC
GTCCCGCCCCGCCGCCCCCCCTCGCCCTTCCAGGGCTCCGGCGAAGGCTGTAATCTGCGG
GGAGCGGCGGCGATGGCATCCACAGCGAAGGTCACCATCACCCTCGGCCGCAGCGGTCAG
GTTGTCAAAAGGCGAACTATTTCTGATATGGGTAATGATGATGAAGTGCCAGTATCAGGT
AGAAAGCGACCTGTCCGAGAGAGGTTAGGAAATAATGTGGCTGATTCTGATTTGTATGGA
AGTCAGCAGAGTAACAAAAGACGGCAAACAGAAAGCAGTAGCTCCCAGCTTGGAGATGAT
GGTTTGGCTCGCCAGATTGGCAGGGATGATTTAAGGCTGAAGCTTATGAGGAAAGGCTTG
ACACAGAAGAGCAACAGTGAGGCAGAACAGAATGGAGTGGATCTCCGTGAAAAGCTTTCC
AGGAAGTCAAAAAAACTCCAGGGATATGAGGCAAGAAGGGGTGATCCAGAATCAAGGTCT
AGTTATGATGAGGGAGAAATCCCAGAATCAGGATCTGGATATGGTTCGAGGGGGAGGGTC
CCAGAGTCAAGAGCCTCTACTCTTGTAAGCCAAGTGCCTTCTTCTAGGAGTGCAGATGGG
TTGTTCAAGTTGGAGTCTTCAGGAAAACCTTATCCCTCGTGGACCGCTGATTGTTTGAGG
TATACGTCCCCAGACAAGCTTCCAAGTGTTCGAAGGGACATGACTCCCCCAAGAAGTGTT
CGAAGAAGGCATGTCTCCCCCGAGGGCCATTCGGAGAGGCATGTCTCCCCCGATAAGTGG
TCGAAGAGGCATGTCTCCCCCGAGAAGTGCTCGAAGAGGCATGTCTCCTCCAAGAAATGT
TCGAGGAGGCATGTCTCCTCC

Homology of Contig U35_21654 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g39090.1	347	7e-61	protein\|SAM domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g12680.2	399	1e-89
Arabidopsis v10	None